BAC Information

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BAC

Clone NameMSMg01-064F02
Chromosome10 (Build37)
Map Location 31,909,279 - 31,909,956
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneLOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761, Trdn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064F02.T7 (MSMg01no064_f02.b1)MSMg01-064F02.TJ (MSMg01no064_f02.g1)
ACCAG289823AG289824
length730736
length of high quality
(start - end)
686 (45 - 730)30 (322 - 351)
definitionCHROMAT_FILE: MSMg01no064_f02.b1 PHD_FILE: MSMg01no064_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:09 2005CHROMAT_FILE: MSMg01no064_f02.g1 PHD_FILE: MSMg01no064_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCATAGTCAATTCCATGTTTCCCACTTGCCTACAAACTATTCCCT
TAGATGGGTTCTTTCTTTCTTTCTTTGTTTCTTTGTTTCTTTGTTTGTTT
GTTTCTTTCTTTCTTTCTTTCTTTCTTTCAACAATATGATAAAATGTTTC
AGCTTTGTGACTTTTAACAATAACTCTGAGTACAGAAAGATAATGCAACA
TAAAGCTCAACTAGCCTCTGAAAAATAATTCTACTCAGCAGGGCTTTCTC
GTGCCAGGGTGGCCAAGATTCTCTTGGTAAAATGTAGTTATTTATAGACA
GGAGCCAAAGTAATATTATGGACATTCAGTGAAAGAAAATAATTTATCTT
TTAAAAGAGTTCTAAACAATTATTGATCAAGTAACCTTTTAGTACATGTT
TCCCTATCAGGTTTTGGGTACATTATCAGGTTTTGGGTAAGTTTTGCAGA
TGCTGCCAAAATATAAGGAAATGATATATGTATATGTATGAATATACATT
TATATACATATATGTTATACCTTTATATACATATGTGTATATTCAATCTG
TACATACTTTAGAACTGAAAAATAATCTCTGTAGTACTAATTAAAACTAT
ATTTCCATTGTTACTCAGATAATCAATGCACCTAATTCAAGTCCATTAAA
CTTATTTTCTAGAGTTTTCTAATACTGTGT
CAATATAGTGGGTAGCCCTGCGGCCCCCCTGNCCTTCAAATTTAGTTAAC
CCTATAAAAGAATCCCCGAAATTCACCAGAAGAACCAAAATTAAAAATAA
AACAGTGAATTGCCTTAAAAATTACTTCCAATTTAATGGATTATTTCCCC
CCTTAAAAGGAATTTTTCCAATTGCCCACCAAAATTTATTTATAAAAAAA
AAAGGTTTTAATTAAAAAATATAAAAAAATACCAATTTTAATAACCAAGA
ACCAAAAAAAAAAATAATTTCAAACCTTAATTTCCCAACCAAATTCCTTC
AAAATGTTCAATGGGGCCCTTCAAAAACCAAACAAACTTCCGAAAAAAAT
CTAAAAACAAATCTGTTTTTAAAGGTTAAAAAAGGGGAAAAAAAATTAAT
TTAATCCACTTAATACCTTCCGGACCAAAGCCAACCATTCCAATTCCTTT
TCCAAAAAACCTTTTTAATAAAAAATTTCCTCCTTTAACTTTCCAAAGCC
AATCCTAAAAGCCCCCAATCCCCCCCACTTGCCTGGTTCCAAAACCCAAA
AATTCTGGTTTCTGGGCCTTGGAATTCCCCTGACCGGGGCCTAATAATTT
TAGCAGAATTAAGGCCCCTCCTTCCAAGGATGGCCACCAAGCCCACTTCC
GGTAACTTATGAAGTAAAAAACCCAACTTCTGGGGGAACGGGTAAGTCCA
AATGGTGGTTGGACCAAAAGGTTTGCCGACTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_f02.b1 MSMg01no064_f02.b1 CHROMAT_FILE:
MSMg01no064_f02.b1 PHD_FILE: MSMg01no064_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:09 2005
         (686 letters)



>mm_chr10_31909150_31910235
          Length = 1086

 Score = 1237 bits (640), Expect = 0.0
 Identities = 670/682 (98%), Gaps = 4/682 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcatagtcaattccatgtttcccacttgcctacaaactattcccttagatggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gaattcttcatagtcaattccatgtttcccacttgcctacaaactattcccttagatggg 748

                                                                       
Query: 65  ttctttctttctttctttgtttctttgtttctttgtttgtttgtttctttctttctttct 124
           |||||||||||||||    ||||||| ||||||| ||| ||| |||||||||||||||||
Sbjct: 747 ttctttctttctttc----tttctttctttctttctttctttctttctttctttctttct 692

                                                                       
Query: 125 ttctttctttcaacaatatgataaaatgtttcagctttgtgacttttaacaataactctg 184
           |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 691 ttctttcttttaacaatatgataaaacgtttcagctttgtgacttttaacaataactctt 632

                                                                       
Query: 185 agtacagaaagataatgcaacataaagctcaactagcctctgaaaaataattctactcag 244
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agaacagaaagataatgcaacataaagctcaactagcctctgaaaaataattctactcag 572

                                                                       
Query: 245 cagggctttctcgtgccagggtggccaagattctcttggtaaaatgtagttatttataga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cagggctttctcgtgccagggtggccaagattctcttggtaaaatgtagttatttataga 512

                                                                       
Query: 305 caggagccaaagtaatattatggacattcagtgaaagaaaataatttatcttttaaaaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 caggagccaaagtaatattatggacattcagtgaaagaaaataatttatcttttaaaaga 452

                                                                       
Query: 365 gttctaaacaattattgatcaagtaaccttttagtacatgtttccctatcaggttttggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gttctaaacaattattgatcaagtaaccttttagtacatgtttccctatcaggttttggg 392

                                                                       
Query: 425 tacattatcaggttttgggtaagttttgcagatgctgccaaaatataaggaaatgatata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tacattatcaggttttgggtaagttttgcagatgctgccaaaatataaggaaatgatata 332

                                                                       
Query: 485 tgtatatgtatgaatatacatttatatacatatatgttatacctttatatacatatgtgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgtatatgtatgaatatacatttatatacatatatgttatacctttatatacatatgtgt 272

                                                                       
Query: 545 atattcaatctgtacatactttagaactgaaaaataatctctgtagtactaattaaaact 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atattcaatctgtacatactttagaactgaaaaataatctctgtagtactaattaaaact 212

                                                                       
Query: 605 atatttccattgttactcagataatcaatgcacctaattcaagtccattaaacttatttt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 atatttccattgttactcagataatcaatgcacctaattcaagtccattaaacttatttt 152

                                 
Query: 665 ctagagttttctaatactgtgt 686
           ||||||||||||||||||||||
Sbjct: 151 ctagagttttctaatactgtgt 130


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 12
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)