BAC Information

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BAC

Clone NameMSMg01-066F08
Chromosome10 (Build37)
Map Location 104,321,690 - 104,322,172
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573, BC067068, Ccdc59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066F08.T7 (MSMg01no066_f08.b1)MSMg01-066F08.TJ (MSMg01no066_f08.g1)
ACCAG291330AG291331
length669660
length of high quality
(start - end)		484 (58 - 541)239 (53 - 291)
definitionCHROMAT_FILE: MSMg01no066_f08.b1 PHD_FILE: MSMg01no066_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:06 2005CHROMAT_FILE: MSMg01no066_f08.g1 PHD_FILE: MSMg01no066_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATTAAATTTATATTTTCTGTACATCTAGGAAGCAAACAAGTTT
AATGGCAAAATCATTACCACATAAACATGCAATAGAGGCTTTCCTTCCTG
AATATAGGGAGAACTAAAAATTTTCAACCACTAAAATAATAATCATCTAA
TTGACAAATATTTCAGCACTCAAATTTCAAAGGAAGAAACCCAAATAATA
CAAGAAAATACAATAAAAAAGTAGAACCATCAGGAAAACATAAATTAAAA
CTAAATTGAGATATTATTTTTACCACAGGATAGGTAGCATCAATGAAATT
ATTAATAAATTCCAGTGTGAGTATGGGGTTATTGCTGATGGGAATGTTAA
TTACTCCAGTTGCTTTGGAAGCAATAGCTACATCCCATTTTATTTAGTTA
TAATATTCTGAGTATATACTTAGAGGAAACTGGTCAGCAGAATATTGAGA
TACTTGCATATGCATGTTTATTTGTGTATTATTAGCAACAGTCATAGCAT
GAAATCAGCCTAGGTGCTCATTCTGGGTGTATGGAGGAAGAGAATGTGTC
ACATATGCACAATGCAGGCTTGTTCAGCCATAAAAAAGAAATTTCACGTC
TAGGAAACCCCCGTCATCC

TCCTATAGTTCGTAGTGGGCGGAATTCTCACTGATTTCTAAAAGACCTAG
ACCACCTAAAGAAATATTTACATTCTTAGTCATCAGGGAAATGCAAATCG
AAAGGACCCTGAGATTCTACCTTAAACCATTCAGAATGGCTAAGATCAAA
TCTCAGGTGACAGCACATGTTGGTGAGGATGTAGAGAAAGAACACTCCTC
CATTGCTGGTGGGATTGCAAACTTGTACAACCACTTTGAAATTCAATCTG
ACAGTTCCTCAGAAAATTGGAAATAGTTCTACCTGAAGACCTTGTCATAC
CGTTCCTGAGCATATAACCAAAAGATGCTCCACCATATGACCCGCACAGG
AGCCCCAATATGTGCATAGAGCCTTATTTATAATAGTGAGAAGTTGTAAA
CAACCCAGATGTTCTTCAACAGAAGAATGGATATGGAAAATGTGGTACAT
TTACTCAATGTATTACTACTTACCTACTTAATAATGATGCACTCACGAAT
TTTGTCTGCAAGTGTATGGCACTATAAAATATCATCCTGAGCGAGATAAC
CCAAATCAAAAAAGGGATATATTCACTGATAAGTGGATGCCAATCTAAAA
GCTTATACCATTCCCGTAACCCTCTCACTTATCTTCATGAACCTCAACAA
GAAGGGATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_f08.b1 MSMg01no066_f08.b1 CHROMAT_FILE:
MSMg01no066_f08.b1 PHD_FILE: MSMg01no066_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:06 2005
         (484 letters)



>mm_chr10_104321490_104322372
          Length = 883

 Score =  897 bits (464), Expect = 0.0
 Identities = 479/484 (98%), Gaps = 1/484 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaatttatattttctgtacatctaggaagcaaacaagtttaatggcaaaatcattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 attaaatttatattttctgtacatctaggaagcaaacaagtttaatggcaaaatcattac 624

                                                                       
Query: 61  cacataaacatgcaatagaggctttccttcctgaatatagggagaactaaaaattttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cacataaacatgcaatagaggctttccttcctgaatatagggagaactaaaaattttcaa 564

                                                                       
Query: 121 ccactaaaataataatcatctaattgacaaatatttcagcactcaaatttcaaaggaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccactaaaataataatcatctaattgacaaatatttcagcactcaaatttcaaaggaaga 504

                                                                       
Query: 181 aacccaaataatacaagaaaatacaataaaaaagtagaaccatcaggaaaacataaatta 240
           ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 503 aacccaaataatacatgaaaatacaataaaaaa-tagaaccatcaggaaaacataaatta 445

                                                                       
Query: 241 aaactaaattgagatattatttttaccacaggataggtagcatcaatgaaattattaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaactaaattgagatattatttttaccacaggataggtagcatcaatgaaattattaata 385

                                                                       
Query: 301 aattccagtgtgagtatggggttattgctgatgggaatgttaattactccagttgctttg 360
           ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 aattctagtgtgagtatggggttattgctgatgggaatgtaaattactccagttgctttg 325

                                                                       
Query: 361 gaagcaatagctacatcccattttatttagttataatattctgagtatatacttagagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaagcaatagctacatcccattttatttagttataatattctgagtatatacttagagga 265

                                                                       
Query: 421 aactggtcagcagaatattgagatacttgcatatgcatgtttatttgtgtattattagca 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aactggtcagcagactattgagatacttgcatatgcatgtttatttgtgtattattagca 205

               
Query: 481 acag 484
           ||||
Sbjct: 204 acag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 883
Length adjustment: 10
Effective length of query: 474
Effective length of database: 873
Effective search space:   413802
Effective search space used:   413802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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