BAC Information

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BAC

Clone NameMSMg01-066H07
Chromosome10 (Build37)
Map Location 63,978,056 - 63,978,400
singlet/doubletsinglet
Overlap geneCtnna3
Upstream geneLrrtm3
Downstream geneLOC665206
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066H07.T7 (MSMg01no066_h07.b1)MSMg01-066H07.TJ (MSMg01no066_h07.g1)
ACCAG291424AG291425
length736710
length of high quality
(start - end)
210 (45 - 254)343 (74 - 416)
definitionCHROMAT_FILE: MSMg01no066_h07.b1 PHD_FILE: MSMg01no066_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:15 2005CHROMAT_FILE: MSMg01no066_h07.g1 PHD_FILE: MSMg01no066_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGTTTAGCCGATATTCCATTTTTTTGATTGGGTTGTTTGGTTTG
TTTGTTTGTTTTTTGGAGGTTAACTTCTTGAGTTCTTTATATATTTTAGA
TATTAGACGTCTATTGGATTTGGGGTTAGTGAAGATTTTTCCCCCAATCT
ATTGGATGCATATTTGTCCTAATGACTATGTCCTTTGCCTTACTAAAGCT
TTTCAGTGTTATGAGACAGAGAATTTATGGAGTTACAGGGCATGATGGTC
AACTCTATAGATCTGATTTTTTGTTTCATAGTGAGTATGGATCATAAATC
TCTAAGTTGATTGTGATAGTACTTTTTTCATGGTATTATATCATTTTTTA
CATAATTTAATTTATCAGACCTTTATGTCTTTCATTTATAAAGAAATATC
TGATCTTCGCTTGTTTCGCCCTCACCTCCCACTGGGTTTTTTTCTTCACA
TCCTCCCTGTTTGCTTTTTTTCTATCTTGTTTTTTACCTGCCTTTTTTTT
TTCCTCCCTTCTGACTCTCTGCTTCTCTTTTTCTCCTTCCCTTGTCTTTT
CTTTCCTCCCCTTGCTTTCTGTTTTTTCGCCCTTTTGTATCTTGCGTATA
TTTTATTCCCGTGTTTTTATTCTTTTTTTTGCTCCTTTCCCTTCGTTTTT
TTTCTCTCTACTTCTTCTCCCCTCTGCCTTCCTTTC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGTACATTCATGCCAGGCTAAGCAT
CATTTGGAAGAATTAAAAGGTAATGTTTATGTAGGGGCATAGCAGCAAAA
CTATGCCACTCAGTCTGTCAGTAACAAATAAAAACTCCTCTTTGCAAATG
CGTTTTCAACCTTCTTCCCCTTTATGTAATCATTGTTTTAAATATGGTTC
TCTCTGATTTCTCAAGTATTTCCCTTACTTCATCCCCTATTCCTCTTCTA
TTGGTCTTATAAAACAAAATGTTGATCTTTTATTCTAAGTGTACCATTAA
CCAGTATCTGAGTTCTTCATTGATGTGAGCTTAAAACTTTAGACATAACC
TTGTATATGATTTTAGAAGAATCTTGGTCATTAAGTTTTATAAGGTGATC
ATAATATTAGAAACACTAGCTTCTTATCATATCTGAAATAGTATATAAGT
GCCATAAATGATACAATGTAACATATATGCATATATAATTTATCATGTCA
TATGTCATATATCACATATTTCCTTCATATATATATCATATATATTTCTT
TCATAGATAGATAGATATGGATCTGAACATAGACATAGACCTAGACTTTA
GACTTACACATATATATTTGTTTTTGATAATACCCTGATCGTGTCTACAT
CTATGCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_h07.g1 MSMg01no066_h07.g1 CHROMAT_FILE:
MSMg01no066_h07.g1 PHD_FILE: MSMg01no066_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:15 2005
         (343 letters)



>mm_chr10_63977856_63978600
          Length = 745

 Score =  572 bits (296), Expect = e-168
 Identities = 333/346 (96%), Gaps = 4/346 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtacattcatgccagg-ctaagcatcatttggaagaa--ttaaaaggtaatgtttat 57
           ||||||||| ||||||||| || |||||||||||||| ||  |||||||||| |||||||
Sbjct: 201 caggtacatccatgccaggcct-agcatcatttggaaaaaatttaaaaggtagtgtttat 259

                                                                       
Query: 58  gtaggggcatagcagcaaaactatgccactcagtctgtcagtaacaaataaaaactcctc 117
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct: 260 gtaggggcatagcagcaaaactgtgccactcagtctgtcagtaacaaataaaaactcctt 319

                                                                       
Query: 118 tttgcaaatgcgttttcaaccttcttcccctttatgtaatcattgttttaaatatggttc 177
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 320 tttgcaaatgcgttttcaaccttcttcccctttatataatcattgttttaaatatggttc 379

                                                                       
Query: 178 tctctgatttctcaagtatttcccttacttcatcccctattcctcttctattggtcttat 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 380 tctctgatttctcaagtatttcccttacttcatcccctattcctcttctattggccttat 439

                                                                       
Query: 238 aaaacaaaatgttgatcttttattctaagtgtaccattaaccagtatctgagttcttcat 297
           |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 440 aaaacaaaatgttgatcttttattctaagtataccattaaccagtagctgagttcttcat 499

                                                         
Query: 298 tgatgtgagcttaaaactttagacataaccttgtatatgattttag 343
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgatgtgagcttaaaactttagacataaccttgtatatgattttag 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 745
Length adjustment: 9
Effective length of query: 334
Effective length of database: 736
Effective search space:   245824
Effective search space used:   245824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)