BAC Information

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BAC

Clone NameMSMg01-067E21
Chromosome10 (Build37)
Map Location 116,726,159 - 116,726,443
singlet/doubletsinglet
Overlap geneLyz
Upstream genePtprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs
Downstream geneCpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b, Mdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067E21.T7 (MSMg01no067_e21.b1)MSMg01-067E21.TJ (MSMg01no067_e21.g1)
ACCAG292072AG292073
length705697
length of high quality
(start - end)
105 (128 - 232)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no067_e21.b1 PHD_FILE: MSMg01no067_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:22 2005CHROMAT_FILE: MSMg01no067_e21.g1 PHD_FILE: MSMg01no067_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:22 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTATACTGCTATACCGCAAACTAAAAAGCCACTGCAAATATGAGTCAGG
AGGGCCCGTGTCTGTCCTTTACCCACTGAACCTGCCAGGGTCATCTAGGT
GGCACTGGCTTTAGAGCTCTAAATGTCACATGAACAAAGGAGTCATGGAA
CCTTCCTCCATAGTTTCAGAGAGCCGTATAAACCAGAAATAAAGAGTCCC
TGCAAGGCCACTGACTGCATCAAATTGTGGAAACAAAGCTTGAGTTGCAT
GAGGTACCCCAAGACATCATTATATGTTTGTGTCATGATATATCTGCCAA
GGACAGTTGCTTTATTTGTTGTCCCCCCCCCACCCCAGCTGGTAGCAAAG
CTGGAGGGTCAGGTCCTTCCAAAGCACAAAAAAAAAAACAGTGCGCAGGG
GTTGGCCTTCTGCGTCTTGTCTGGTTGAGCTCCAGCAGTTTTTCTCGGTG
TTTCTATTCATTCCTTCTCCGATGGCTAGGCCCATTCTGAGCCACCCGAC
ATTGCCAGCATCCTGATTTGCCGTTTCAATTTTATACTGTAAGATAGCTG
CCCGCTATCCGTACCCCGCCTAGCTTTATAAGGACAATGGGCATTTTGTA
CCTTTTTCTTCCGTACGCTTGAAACCGTTAATTATTTATTCCTCTTTGCG
ATACC
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGCCCAATACAGGTCAGTGTTTGTTACTGCAGACATG
GTTTTAAGAGCAAATCAATATACTCCCTCCAGTTATCACAAATGCAAGGA
CACTAGAGAAATAATTCGTTGAACTCGCTGCTTACTGCCACAGAGAACGC
TGGCTGGATCTGACCTGAAGTGGTTCTATAACTGTCCTTGTCACTCCTCA
CCCTTGTCTTTCAGCTCTGATGCAGGATGACATCACTGCAGCCATACAAT
GTGCAAAGAGGGTGGTGAGAGATCCCCTTGGCATTCGAGCATGGTAGGTT
AAAACATTGGAAGGTTTTTCTTCTGCCCCCCCCCCCCCTAAGCAGTGTGG
CTAATGCCTAAGTGTCATTCTGAGAAGGGCAAGAGAAACTGGGGGCTTAG
CCTACAGCATCATCTTTAGGGAATTTCTCCAGCTTGTGAGAGTCCCCCAT
ATACCTACTTCCTTCTCAGGCCTGCAGGCTACCTGTAGAATCAGTGGACT
GCACTTTCATACGAAAATGCCTTGCTCTTGAACATCCTGTGCTCTGCTGA
GTAAGCCCAACATCTCACTGCCAGTAAAAACTTGGCTCCCGAGTCCGAGA
CGGCTTCCGGTTGAATGAATAGCTGTGGTGTCCAACCGTTCTTGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_e21.g1 MSMg01no067_e21.g1 CHROMAT_FILE:
MSMg01no067_e21.g1 PHD_FILE: MSMg01no067_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:22 2005
         (285 letters)



>mm_chr10_116725959_116726643
          Length = 685

 Score =  497 bits (257), Expect = e-145
 Identities = 278/285 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtcagtgtttgttactgcagacatggttttaagagcaaatcaatatactccctccagtt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||
Sbjct: 485 ggtcagtgtttgttactgcagacatggttttaagagcaaatcaatagactgtctccagtt 426

                                                                       
Query: 61  atcacaaatgcaaggacactagagaaataattcgttgaactcgctgcttactgccacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atcacaaatgcaaggacactagagaaataattcgttgaactcgctgcttactgccacaga 366

                                                                       
Query: 121 gaacgctggctggatctgacctgaagtggttctataactgtccttgtcactcctcaccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 365 gaacgctggctggatctgacctgaagtggttctataactgtccttgtcactcctcacccc 306

                                                                       
Query: 181 tgtctttcagctctgatgcaggatgacatcactgcagccatacaatgtgcaaagagggtg 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgtctttcagctctgctgcaggatgacatcactgcagccatacaatgtgcaaagagggtg 246

                                                        
Query: 241 gtgagagatccccttggcattcgagcatggtaggttaaaacattg 285
           |||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 245 gtgagagatccccaaggcattcgagcatggtaggttaaaacattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)