BAC Information

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BAC

Clone NameMSMg01-068E07
Chromosome10 (Build37)
Map Location 5,667,660 - 5,667,810
singlet/doubletsinglet
Overlap geneEsr1
Upstream geneVip, Myct1, Syne1
Downstream geneLOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068E07.T7 (MSMg01no068_e07.b1)MSMg01-068E07.TJ (MSMg01no068_e07.g1)
ACCAG292802AG292803
length825902
length of high quality
(start - end)
275 (112 - 386)151 (140 - 290)
definitionCHROMAT_FILE: MSMg01no068_e07.b1 PHD_FILE: MSMg01no068_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:38 2005CHROMAT_FILE: MSMg01no068_e07.g1 PHD_FILE: MSMg01no068_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTAGTTTTTCCCTTCTCCCTTATCCTCTTCCCCCCTCCCCNGCN
NNNNNNNNNNNNGCTATGTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCTTCATCTTATTCTGAAGGCAAACAGGAAA
AGACTGGCTTCCATGTGGTTGGGAGGAGGGTCTCATTGCCCACCCCCACA
GTGACACACTTCTTTCATCAAGGCTACACCTACTTCAACAAGGCCACACC
TCCTAATAGTGCCACTCCCTGGGCCAAGCATATTCAAGCCACCACAAAAA
CAAATACAGGTTGATTTCAAACAGAGGAAAACACAGCTACAAAATGACCT
ATTTTAAATGTAATTTTTACCAGGAATCTGGAAGTGGGCGTCATAGTAGT
TATGCTTCTTGCATGGAGTGATGGATTTTTTTTTTTTACCCCCCCCCACC
CCAGGCTTCGCTTTCTTCTCCGCCTTTGTTTCCAGATGGCCACAAAAAAA
GAAAACCAGATCTCTGAGCCTGTTGTTAAGTTGTTAAATGAATCTGATTC
TCACCTTAAAGTCCTACTTACTTCTCCTTGTGTAAGAAAACAAGTTGTAT
GCTCTCCAAAGCCTTGCTGATCCTCCTGCAGGATACATTTGCTTTTCTGA
TATACGCCTTTGTTAAGATTAACCTGTTTCTTTATTATTATTTCCTAATC
TCACCTAATTGTTGTATGGCTGCACGATTTCATGTTCATTATATGCTCCT
TGTTTATATATTATTTATCTCAGCCTTCCTTCGTTATCTCTCGTTCGCAT
CGACCTCTTAATTGTTACTAAAGTN
CTCCTCCTTCCCCCTCCCTCCCCCCCTTTTTTCTCTCCTTCTNNANNNNN
ATTTAATNNNTTAACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGACCAAA
TGGGACTACTAACATCCCATGCTTTTTGCAACTTAATCATGTCCTCTTGT
GAACGTGAACCAAAACCATGTTTCTAGAGACTGGTGGGGACATCCTATGA
CAGTGTGGTGGCCCCACCTGGGATACAATAGATACAGGGAACACAGCAGA
GTATAAAGCTGAAAGCAACCCATAGCTTTGATAACATTAAGCCATCGGAT
CAATCAGCCAGAGATTCTAGCCTGCTGCACGCCACTTTTTTAACATCTGC
TTTGTGAGCTGAACTCCTAATTGTTTTTTTTATTTTCCCCCCTGCTCCCC
CCGAGTGCATGACTGTGTATACTTAAACCGCATTCTCTTCTTCTCCCCTA
AAAAAAAAAAAAAATTTGCACGTAATGGGCGGGCGGACACAGTTCCCGTA
TCCACTAGCCAATTGATAGTATTACTTATACCTGGTTCTTTTTACCTGGT
TTACCCCCTTATTTACTTTAATCTTTCCCTTCCTTTGCTAACGGTCTACT
ACAAACACCTTCATAGCTTTTAACCTTGTTGCCCGTTATACTCACCCTTT
TTCCCCCCCCTGTTTTAGTATCACTTTTACCTTGTTCCGATTACCGCATA
TTAATTTGTATACCTTAATTTTATTATTTTTACATTTACCGCATAGTCTA
TAATGTTTTTCTTCCCACCATGTACATTTGTCCTATCTCACTTTTACTCC
GCCTCTTTTTATTTACCTAATCATACTCCCATACATCCCTGTATCTCTTT
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_e07.g1 MSMg01no068_e07.g1 CHROMAT_FILE:
MSMg01no068_e07.g1 PHD_FILE: MSMg01no068_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:38 2005
         (151 letters)



>mm_chr10_5667460_5668010
          Length = 551

 Score =  284 bits (147), Expect = 1e-81
 Identities = 150/151 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagaccaaatgggactactaacatcccatgctttttgcaacttaatcatgtcctcttg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 atcagaccaaatgggactactaacatcccgtgctttttgcaacttaatcatgtcctcttg 260

                                                                       
Query: 61  tgaacgtgaaccaaaaccatgtttctagagactggtggggacatcctatgacagtgtggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaacgtgaaccaaaaccatgtttctagagactggtggggacatcctatgacagtgtggt 320

                                          
Query: 121 ggccccacctgggatacaatagatacaggga 151
           |||||||||||||||||||||||||||||||
Sbjct: 321 ggccccacctgggatacaatagatacaggga 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 551
Length adjustment: 8
Effective length of query: 143
Effective length of database: 543
Effective search space:    77649
Effective search space used:    77649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)