BAC Information

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BAC

Clone NameMSMg01-068L05
Chromosome10 (Build37)
Map Location 89,596,824 - 89,741,074
singlet/doubletdoublet
Overlap geneAnks1b, LOC544719
Upstream geneTmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, LOC100043039
Downstream geneApaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068L05.T7 (MSMg01no068_l05.b1)MSMg01-068L05.TJ (MSMg01no068_l05.g1)
ACCAG293133AG293134
length698712
length of high quality
(start - end)
548 (46 - 593)419 (76 - 494)
definitionCHROMAT_FILE: MSMg01no068_l05.b1 PHD_FILE: MSMg01no068_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:13 2005CHROMAT_FILE: MSMg01no068_l05.g1 PHD_FILE: MSMg01no068_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(89,740,526 - 89,741,074)(89,596,824 - 89,597,241)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAATCCGCGGATTCACTCT
ATAGATCCACTGGCCTTGAAATCAGAGAACCACCTGTCTCTGCCTTCTTA
GTGCTAGGATTAAAGGTGAGGGCCCCCACACTATTTTATGTAAGTCTTAC
AAACCTACTGAGCCTGGAGGCCCAGAATCTTTGACAGATGCTGATGGGAC
AGATGGATGAGTGAATGGTTGTGTGGAAAGGGAACATTCCAAAGGGCAAG
AACAAACGCTGACAAAGATCTAGGATGTACGTATGCAAAGTGGCAGATGA
CCTTTCAGTGAATCTTCATTCCTTTCAACAAGTTACTCGTTATTTTGCCC
AATTGCACTATTACACATTTTTAGACCAATGTGATGAGCTGAGACATTTG
TAAATACATTGCTTTCTTAACTGAGGAAAACTAAATAATGAAATAGTTTT
AATTCTCGATTTTAAAAAACTATTTAAGGAGAAAATTAATACCAAAAAAC
TATAATTTTATCTTTCCCATATTTTAAAAAATTGCTTCAGGACCATTAAA
AGAACAATCTAGTTTGCATTTCTCAATTTTGTGTATTCTAATATGAATAT
AAAATGCAATTCACTGGATAGAATCTTGACTACCATACGAACTGATTATT
AAATTTTCCCATTTAAATGTACTGCGTACGTGAAGCTGTATGTCAGCT
NCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCGCATGGTCAGTCCTAGGGTCAG
TGAGCCTTCAGCCTCCCTTTTATCCTTGTACAGTCTGTAGTAATGGATGG
CGACGTCGTCCAGTTGGACTGCTTCTTTGATGTACTTCAGGTAGGCCTCG
GAGGCCGTCAGGGCAAACTGGTCCTTGTGCATGTTTGGGATGTGTTTCAG
GATGTAGTCCTTCCCCCTCTTGGAAACAACCCATGCCGGGGAAGTAAGCC
TCTGGCTCAAAGTAGTCTCCGTGGTGCAGTTTCCTTTTGAAGTTGCCGAG
GTCAGCTTGCAGTGCAAAGGCTGCCAGCAGGAAGTAGGCCTCCTCTCTGA
GCACACACTGGTAGTGCAGCACCTGTTTCCGTAGGTGCCAGTAATAATAG
TATCTTGCAATTCGGTCACTGATCAGCTTCCCATTCTCCACGTAGTACTG
CACCGGGAAGTGGATGATCATGGGGGGCCCAAACTGGTCGATGCCCTTGC
TGGCCTCCTTTTTCCATTCTTTTTGGACATTACTTATAAAGCTTTTTGTT
GACAATTCCTTATATACTTGTTCATTATTTTGTTATACACTGATACCACT
GAGTTGACTGTCCCTTTAACCTGAGTAGGTCATTTTCCTGTTACTACACC
TGGTCGATCCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_l05.b1 MSMg01no068_l05.b1 CHROMAT_FILE:
MSMg01no068_l05.b1 PHD_FILE: MSMg01no068_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:13 2005
         (548 letters)



>mm_chr10_89740226_89741173
          Length = 948

 Score = 1023 bits (529), Expect = 0.0
 Identities = 544/549 (99%), Gaps = 1/549 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctatagatc-cactggccttgaaatcagagaaccacctgtctctgccttcttagtgc 59
           |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 actctatagagcaaactggccttgaaatcagagaaccacctgtctctgccttcttagtgc 790

                                                                       
Query: 60  taggattaaaggtgagggcccccacactattttatgtaagtcttacaaacctactgagcc 119
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 789 taggattaaaggtgagggcccccacactattttatgtgagtcttacaaacctactgagcc 730

                                                                       
Query: 120 tggaggcccagaatctttgacagatgctgatgggacagatggatgagtgaatggttgtgt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tggaggcccagaatctttgacagatgctgatgggacagatggatgagtgaatggttgtgt 670

                                                                       
Query: 180 ggaaagggaacattccaaagggcaagaacaaacgctgacaaagatctaggatgtacgtat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ggaaagggaacattccaaagggcaagaacaaacgctgacaaagatctaggatgtacgtat 610

                                                                       
Query: 240 gcaaagtggcagatgacctttcagtgaatcttcattcctttcaacaagttactcgttatt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gcaaagtggcagatgacctttcagtgaatcttcattcctttcaacaagttactcgttatt 550

                                                                       
Query: 300 ttgcccaattgcactattacacatttttagaccaatgtgatgagctgagacatttgtaaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttgcccaattgcactattacacatttttagaccaatgtgatgagctgagacatttgtaaa 490

                                                                       
Query: 360 tacattgctttcttaactgaggaaaactaaataatgaaatagttttaattctcgatttta 419
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tacgttgctttcttaactgaggaaaactaaataatgaaatagttttaattctcgatttta 430

                                                                       
Query: 420 aaaaactatttaaggagaaaattaataccaaaaaactataattttatctttcccatattt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaaaactatttaaggagaaaattaataccaaaaaactataattttatctttcccatattt 370

                                                                       
Query: 480 taaaaaattgcttcaggaccattaaaagaacaatctagtttgcatttctcaattttgtgt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 taaaaaattgcttcaggaccattaaaagaacaatctagtttgcatttctcaattttgtgt 310

                    
Query: 540 attctaata 548
           |||||||||
Sbjct: 309 attctaata 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no068_l05.g1 MSMg01no068_l05.g1 CHROMAT_FILE:
MSMg01no068_l05.g1 PHD_FILE: MSMg01no068_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:13 2005
         (419 letters)



>mm_chr10_89596624_89597441
          Length = 818

 Score =  764 bits (395), Expect = 0.0
 Identities = 413/419 (98%), Gaps = 1/419 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcgcatggtcagtcctagggtcagtgagccttcagcctcccttttatccttgtacagtc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ctcgcatggtcagtcctagggtcagtgagccttcagcctcccttttatccttgtacggtc 260

                                                                       
Query: 61  tgtagtaatggatggcgacgtcgtccagttggactgcttctttgatgtacttcaggtagg 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tgtagtaatggatggcgacgtcgtccagtcggactgcttctttgatgtacttcaggtagg 320

                                                                       
Query: 121 cctcggaggccgtcagggcaaactggtccttgtgcatgtttgggatgtgtttcaggatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcggaggccgtcagggcaaactggtccttgtgcatgtttgggatgtgtttcaggatgt 380

                                                                       
Query: 181 agtccttccccctcttggaaacaacccatgccggggaagtaagcctctggctcaaagtag 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 agtccttccccctcttggaaacaacccatgccggg-aagtaagcctctggctcaaagtag 439

                                                                       
Query: 241 tctccgtggtgcagtttccttttgaagttgccgaggtcagcttgcagtgcaaaggctgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctccgtggtgcagtttccttttgaagttgccgaggtcagcttgcagtgcaaaggctgcc 499

                                                                       
Query: 301 agcaggaagtaggcctcctctctgagcacacactggtagtgcagcacctgtttccgtagg 360
           ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 500 agcaggaagaaggcctcctctctgagcacacactgggagtgcagcacctgtttccgtagg 559

                                                                      
Query: 361 tgccagtaataatagtatcttgcaattcggtcactgatcagcttcccattctccacgta 419
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgccaataataatagtatcttgcaattcggtcactgatcagcttcccattctccacgta 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 818
Length adjustment: 9
Effective length of query: 410
Effective length of database: 809
Effective search space:   331690
Effective search space used:   331690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)