BAC Information

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BAC

Clone NameMSMg01-068N12
Chromosome10 (Build37)
Map Location 86,829,437 - 86,829,748
singlet/doubletsinglet
Overlap genenone
Upstream geneSyn3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2, 1700113H08Rik
Downstream geneAscl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068N12.T7 (MSMg01no068_n12.b1)MSMg01-068N12.TJ (MSMg01no068_n12.g1)
ACCAG293243AG293244
length698697
length of high quality
(start - end)
319 (51 - 369)243 (81 - 323)
definitionCHROMAT_FILE: MSMg01no068_n12.b1 PHD_FILE: MSMg01no068_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:25 2005CHROMAT_FILE: MSMg01no068_n12.g1 PHD_FILE: MSMg01no068_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAATATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTGTCCAGAGCTTTTCTTTCTTTTAGACAGCTACATGTTC
TTTGAGATAGAAAGCTGTATTTGACTTCTATTTTTTGCTCAACATTTAAA
ACCTACTCTGCACCTAGCTGAATATCTGGAATAGTAAACATATTAAAAAG
ATAGTAATTGAAAGGATAAAGATATTGTTAGAGGGAACAACGTAACTCAT
GTGTGTAGATACTCACACGGAGTCACTATTTCTGACCTTTCACCCCAGGC
CACCACTGTCCATGATGAGAAGAGATATGCAATTGATTTTACCACCTTAA
TTCAAACGTGACCTTTTTTTTTGTTGCCGACCCCATGACCCATGATGTGG
TGGCATAGCCCTGGGCTTTTTTTTTTTTTACAACAACTGAAAAAATCTGG
GCATGCCACTGACTTGTCAACTGAGGGTCCTGGAGGAACTAGAGGTCTGT
GATAAATTGAATGACAGAAAAATGGAAAAGCCATCGTCAGTTTACACAAC
CATTTCTCTGCCCCAACACAGGATCTGATCAGGGCAAGATTCCCGGCAGG
AAGTCTGAGTCCCCTTCGTACAGGCAATTCCCACTCTTGGGACAGTGGGT
AGAAGAGTATTTTTAGGGCTCCACTCTTACATTATTGAGCACTGGTTG
TTTTATTCGATGCAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCC
ATTTTTTAATGGGGTTGTTTGATTTTCTCCAGTCCACCTTCTTGAGTTCT
TTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGAT
CCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATTGACGGTGTCTTTTG
CCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGAT
CTTACAGCACAAGCCATTTAGAATTGTTTTTTCATGTTCTTAACCACTGA
ACCATCTCTTCAGGTTTTTTTTTTTTCCAGCCCTGCCAGCACATTATTTG
TTATTTCTTGTTTTTCTGATTGTTATTATCCAAACAAATGTGACCAAATT
AGAAGCCGAATTTATCTTTAGTCTTTGTCTTCCAAGGGAATGAACCACAG
CATTAGTTTCAGAGGTTGTATGGAAAATGCTATAAAGAAACTAAAACATT
AACAGTTTTTGAAAAAACACTATTATGTACCAAACATCCTGTAAGAACTT
TTCTTATATTTTTATGATATACCTTTTATCCATGGATAAAGTACATAGAG
ATCTTTTGGTTTTTTGTTACCCCACTGCCAGTGTATTTATGACCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_n12.b1 MSMg01no068_n12.b1 CHROMAT_FILE:
MSMg01no068_n12.b1 PHD_FILE: MSMg01no068_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:25 2005
         (319 letters)



>mm_chr10_86829233_86829951
          Length = 719

 Score =  557 bits (288), Expect = e-163
 Identities = 306/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgtccagagcttttctttcttttagacagctacatgttctttgagatagaaag 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 516 gaattcttgtccagtgcttttctttcttttagacagctacatgttctttgagatacaaag 457

                                                                       
Query: 65  ctgtatttgacttctattttttgctcaacatttaaaacctactctgcacctagctgaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 456 ctgtatttgacttctattttttgctcaacatttaaaacctactctgcacctagttgaata 397

                                                                       
Query: 125 tctggaatagtaaacatattaaaaagatagtaattgaaaggataaagatattgttagagg 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 396 tctggaatagtaaacatattaaaaagatagtagttgaaaggataaagatattgttagagg 337

                                                                       
Query: 185 gaacaacgtaactcatgtgtgtagatactcacacggagtcactatttctgacctttcacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gaacaacgtaactcatgtgtgtagatactcacacggagtcactatttctgacctttcacc 277

                                                                       
Query: 245 ccaggccaccactgtccatgatgagaagagatatgcaattgattttaccaccttaattca 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 276 ccaggccaccactgtccatgatgagaagagataggcaattgattttaccaccttaattca 217

                       
Query: 305 aacgtgaccttt 316
           ||| ||||||||
Sbjct: 216 aacttgaccttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)