BAC Information

Click to search

BAC

Clone NameMSMg01-069C17
Chromosome10 (Build37)
Map Location 127,740,503 - 127,740,735
singlet/doubletsinglet
Overlap geneUsp52
Upstream geneMars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a
Downstream geneTmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069C17.T7 (MSMg01no069_c17.b1)MSMg01-069C17.TJ (MSMg01no069_c17.g1)
ACCAG293492AG293493
length687705
length of high quality
(start - end)		232 (110 - 341)237 (74 - 310)
definitionCHROMAT_FILE: MSMg01no069_c17.b1 PHD_FILE: MSMg01no069_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:50 2005CHROMAT_FILE: MSMg01no069_c17.g1 PHD_FILE: MSMg01no069_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCGACTCCTATATTGCGAGGATCCGCGGAATTCTCCTGTTCTTCCGAG
ACAGCACTTCATGAATTCACGAAGGACAAAGCCACACACCTTCACTTGAT
AATCCCCAGTCACTATTTTCTTCTTTTAGACAGGGTCTTGTTTTTGTTTT
TCGAGTCAGTGTTTCTCTATGTAGCCCTAGCTGCCCTAGAACTCACTCTG
TAGATCAGGCTGACCAGACTGGATCTTACTAGGTACTGGCCTAGAATTAG
CTATGCAACCCAGGCTAGTCAAACCTATTGTCTTTCCTCAGCCTCTTCTG
TGTTGGAATTATAGGCTAGCTCTACCATTCCTGGGTGTTTTGTTTTTTCT
AGACCCCCCCCTCCTCTGTGTAGCCCTGGCTGTCCTGTAGCCCTGGCTGT
CCTGTATCTAAATTGCTCTGTAGGCCACGGTGGCCTCTGTCTCCTGGGTG
CTGGTATTAAAGATGATTACTACCCTACTTCATCTGTTACGATTTAAAGG
TTCTTACTATATATTACCCGCCGGCCTGGTATCCTGCCGAGTACTCTTCA
TACGGATTTCAAATTCCCGTCCCATCTTGGTCCTTGTCGTACTGATCCTC
GCTTACCTTGGCATGTACCACCCTTGCTCCTTCACCTTATACCTTTGCAC
TTTTAATACCTGCCCCATTTTGCCTTTCTCCTTCTAT

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCAAGTATTCAAGGCGCTCCAAATATCCGCCATGGAGAAATCTTGGT
AATGATTCATCCCCCGTAAGCATCCCAGGAACACGTCTTGACCTTTGCCC
TAATCCTTCCCCTCCCGTCCCCTGCGCTGGGGGAGAATTCTGGGTAACCA
GTTTCTCTGGTTCGCTCAAAGAATTCTGGGTAGCTATCCGTTTCCATTAC
TTCCCCCTTACCCCCGCCCCGTTTGTGGGTAACTGGCCGTTCTTGTTACC
CACCCCTTGTTTTTTGCTGGGTAACCACTGTAAAGGATTCTGGGATATTT
TTTTTTTTCGCCCCCCCTCCCGCCCAGTCTCTTTGTCTTATGTTCTATTC
TCTTACTCTCGCATTTCAGAAATCTCCCCCGACCTTGAGCCTCTTATCAA
CCTGTTCCCTTCACCTTTGCGTTTCACGAGACCGGTTATGCTATAGTTTT
ATCATTCGCTGTCTTGCCTTTGTACTTATCAAGTTTAAATTTCGCTATCC
ATTTACCCTGTCTCGCTTACCCTTAGTTCTATTGTGCGCATTGTCCTCTT
TTTGCCATGTCCCAGCCTTTGTTCAGGTTAGATCCATCCCCCTTTGCTTA
CTTCGATTGTCCCGTTCCCTTCTTTTCCACCTTATCCCTACCTTTCGCCC
TACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_c17.g1 MSMg01no069_c17.g1 CHROMAT_FILE:
MSMg01no069_c17.g1 PHD_FILE: MSMg01no069_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:50 2005
         (237 letters)



>mm_chr10_127740303_127740939
          Length = 637

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatatccgccatggagaaatcttggtaatgattcatcccccgtaagcatcccaggaaca 60
           ||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||
Sbjct: 201 aaatatccgccatggagaaatcttggtaatgacccattccccgtaagcatcccaggaaca 260

                                                                       
Query: 61  cgtcttgacctttgccctaatccttcccctcccgtcccctgcgctgggggagaattctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtcttgacctttgccctaatccttcccctcccgtcccctgcgctgggggagaattctgg 320

                                                                       
Query: 121 gtaaccagtttctctggttcgctcaaagaattctgggtagctatccgtttccattacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaccagtttctctggttcgctcaaagaattctgggtagctatccgtttccattacttc 380

                                                                
Query: 181 ccccttacccccgccccgtttgtgggtaactggccgttcttgttacccacccc 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccttacccccgccccgtttgtgggtaactggccgttcttgttacccacccc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |