BAC Information

Click to search

BAC

Clone NameMSMg01-069C21
Chromosome10 (Build37)
Map Location 16,676,094 - 16,676,327
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382457, LOC546472, LOC100039576
Downstream geneLOC627511, Cited2, Txlnb, LOC665321, Heca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069C21.T7 (MSMg01no069_c21.b1)MSMg01-069C21.TJ (MSMg01no069_c21.g1)
ACCAG293500AG293501
length688699
length of high quality
(start - end)
49 (240 - 288)238 (126 - 363)
definitionCHROMAT_FILE: MSMg01no069_c21.b1 PHD_FILE: MSMg01no069_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:51 2005CHROMAT_FILE: MSMg01no069_c21.g1 PHD_FILE: MSMg01no069_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACCAAAATCGGNNNNTTTTNCTATCCGCCNAANNCGCNANNNATTGCNN
NGACCCGAGACACNGNNCCGANNNGGNNNCGNCCNGGAACAGNNGGGTTT
TTTNCCCACAAAAAANNGANNAGNNNACNGNGNANAGNANCCGGGNCNGG
CANNNGNGNNCCCNNANAGCCNACANGACCCCNGACCAGGCNNNCACGGC
CCCCGCNGANNAAACCGCCGNACCCACGACAGTTTTTTTTTTATGTTAAT
TGGCCCCTTTCCCTTGCANCTTCTAATATTCTTTCTTTGCCCCGACCTTT
CACCTCCCTTTCNANNANGNGACAAGAGGAANACCNCNCCTTTTTTTTTC
TCCCCCGCCCCCCCNAGGNTNCNTGNACCTTTATGGCTATCTCTTTCTTT
ACCTTGAAAAAAAAAACAACTATCATTTTGTTGAACATATTTTCACTTCC
ACTGACGTGATAATCTCTGTTCTCTATTCTGATTATTCATAGATTTGTCC
TTTTTATTATTTTCCTGATTTCCTTGTAACGTTCCGTCTTGCAACCTTCC
TTATGCTTTTAAACTTTCCCTCCTACTTGCCGTTCTCCTCCTTCCTGCCT
TCCCTCTTCCCTCAAACATCCCTCCCCTCCAACCCTTTTTTTTTTTTTTT
TTTTANCGCCGACCACTAGAACTTCAGTGAGCGACGTC
ATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTGCCAAATACAGAAATATTCATGAAACCAGGACACTTAA
GAGAGGGTGTTTTGTACTAATGCCTAGGGAAATATCTGATCTGGTCACTG
AATACTCTATGTTGAGAGTAACACTAATGTTTCAATGCCTACCAGCCATA
AGATTTCTCAGCTATGTAGGTTTGTCATGTAGTTCTATGTTGATATAACA
GATACCTAACTCAAACGAGCATTTGAAATTTACTGATGCCTAGCGAGAAG
GCTGTCTTCACGAGGGATGGTTTTTCCTGCCATGTATGATGACCTAATTC
ATTTCAGTGTTTTTTTTTTTAACCCGCCCCCAACGAAATAACTGATCCCT
GAAATCTATCCCCACCCCTCACACACACACACAAACAAAAACAGATTAGA
TTTTAAAATGTTTAGTTAATAATGTCACAACCTATGGTAAGTCTGTGTTT
TGCCACAGAGATTACTCTATTCAGGCAAAAAAATGTTGAGATAATCTCTA
GGAATTAAACACTGATGAGTCCAGCCGATTGTTATGATTAAGACAACTGA
CACATCTTTTTTCTTTGTGCCTCTAAATTATCTATGTATCCCATTGTCTT
CTTAAATCTCATTCATTACTATCATACGTTACCGGCCTTGTGCAAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_c21.g1 MSMg01no069_c21.g1 CHROMAT_FILE:
MSMg01no069_c21.g1 PHD_FILE: MSMg01no069_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:51 2005
         (238 letters)



>mm_chr10_16675894_16676531
          Length = 638

 Score =  414 bits (214), Expect = e-120
 Identities = 229/234 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggaaatatctgatctggtcactgaatactctatgttgagagtaacactaatgtttcaa 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggaaatatctgatccggtcactgaatactctatgttgagagtaacactaatgtttcaa 260

                                                                       
Query: 61  tgcctaccagccataagatttctcagctatgtaggtttgtcatgtagttctatgttgata 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tgcctaccagccataagatttctcagctatgtaggtttgtcatgtagttctatgtttata 320

                                                                       
Query: 121 taacagatacctaactcaaacgagcatttgaaatttactgatgcctagcgagaaggctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacagatacctaactcaaacgagcatttgaaatttactgatgcctagcgagaaggctgt 380

                                                                 
Query: 181 cttcacgagggatggtttttcctgccatgtatgatgacctaattcatttcagtg 234
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcacgagggatggcacttcctgccatgtatgatgacctaattcatttcagtg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)