BAC Information

Click to search

BAC

Clone NameMSMg01-069D10
Chromosome10 (Build37)
Map Location 96,231,837 - 96,232,000
singlet/doubletsinglet
Overlap geneLOC628256
Upstream geneEea1, EG432491, LOC667380, Btg1
Downstream gene4930556N09Rik, EG667407, Dcn, Lum, Kera, Epyc, 4921510H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069D10.T7 (MSMg01no069_d10.b1)MSMg01-069D10.TJ (MSMg01no069_d10.g1)
ACCAG293524AG293525
length767774
length of high quality
(start - end)
164 (129 - 292)33 (131 - 163)
definitionCHROMAT_FILE: MSMg01no069_d10.b1 PHD_FILE: MSMg01no069_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:54 2005CHROMAT_FILE: MSMg01no069_d10.g1 PHD_FILE: MSMg01no069_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTTCCCCCTCCTTTTTTTTCCTCTCTTCTCTTTTTCCTCTCNCTTCTT
CTTCCCCCCACTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAG
GATCCGCGGAATTCCTTATTTCTAAAGAATAACTTGATGAGAATTCTACC
GTTACTATATCCAGCTTTTTGGTAAAGCTCAATAAGGCATCTGTCTTGGT
TCACCATTACATCCTTATCAAATGAAAGCCTTGTATCTACTTCTGTGGCC
ACACAGCCTGGAATCTTCTTTAGTATTTCTGCTTTAAACAACACATATAG
TTTATCAATAACATTTTTAATCCATTCCTGTTTTTTTTTCTTTTTATAAA
GGATTTATTTACTTTATGTATGTGATTTACAGTACACTGTAGCTGTTTTC
AGACACACCATATTATTGCATCGAACCCCATTACAGATGGTTGTGAACCA
CCATATGGTTGTTGGGAACTCAACTCATTGACCTCTGGAATAGCATTCAG
TGCTCTTATTCTCTGAGTCATCTCTCCAATCCCCTAATCTCCTACTCTTG
CCGCACACTCATATTCCTTGCTGTATTCAATGGCACTTACCACTATTTTT
TGCTGTGCACTAACCCGTGTCTGTATCCCGGTATGGCTTGGTGCTGGTTC
CCTGCGCTCTTTATCCACTTAGCCTTCCATTCCACCTCCTTGTCCACTTA
TGCCGATTTTATTTTCTCCCTGTTTACACCTTATACTTTTTTTTTTTTCC
CTTGACATGCTCCAACC
TTTTTCTTTTTTTTCCTTTTTTTTCTTTTTTTCCCCTTTTCCTCTCTTCT
CNTNCTTCTAATGCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCCCCGCGAGAATTCCCCAGAATAAAATGTT
ATCATTATATGGATGATGTCTCTTCTGGCACCACCGACGGAAGAAATGCT
GGATTTGGCATATAGTAAGACCATACAACAGCTACAAAAGAGAAGGCTTA
CAGTAGCCCCTGAAAAGGTGCAGAAGGGCAAGGTCATCCATTATTTAGGA
AGCAAAATACCTTAATGATATATAACTCCACAGAATATTCTTATCACAAC
TGATCATCTAAGGACTTTAAATGATTTTCTTAAGTTGCTAGGAGATATTC
AATGGGTTAGGCCTTATTTTTTTCTCCCCCCCCCCCCCTTGTAACCTCTT
TATGATATCTTGCCATTTAGCGACCGCCCTGAATTACAAATACAGTTCTT
TCTTATTATGGATGGGAAGTCTTAATGTTAGCAGAGAAGGCTATTCAAAT
TGCTGTTTTAAAGAGGAGAGAGGTTGATCTTCCTTTTTTATCACGTATTT
TGCCTTCTTTAAACCTCCCCACTGGATCCATAGTTCTTGGCCTCCTTTAT
TACGGATCTACCCTAATATTTTCCCCGCCAAATTGTTATTCCCATTATCC
TGCCTTATTTTGTTTTATTAGATTCTTGTTGGGACTTACAGCCATGTTTT
GTTTATATCTTGTCCCCCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_d10.b1 MSMg01no069_d10.b1 CHROMAT_FILE:
MSMg01no069_d10.b1 PHD_FILE: MSMg01no069_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:54 2005
         (164 letters)



>mm_chr10_96231637_96232200
          Length = 564

 Score =  286 bits (148), Expect = 4e-82
 Identities = 160/164 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataacttgatgagaattctaccgttactatatccagctttttggtaaagctcaataaggc 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ataacttgatgagaattctaccattactatatccagctttttggtaaagctcaatgaggc 260

                                                                       
Query: 61  atctgtcttggttcaccattacatccttatcaaatgaaagccttgtatctacttctgtgg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctgtcttgggtcaccattacatccttatcaaatgaaagccttgtatctacttctgtgg 320

                                                       
Query: 121 ccacacagcctggaatcttctttagtatttctgctttaaacaac 164
           ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ccacacagcctggaaccttctttagtatttctgctttaaacaac 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)