BAC Information

Click to search

BAC

Clone NameMSMg01-069H01
Chromosome10 (Build37)
Map Location 45,049,861 - 45,050,037
singlet/doubletsinglet
Overlap genenone
Upstream geneAtg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3
Downstream geneBves, Lin28b, Dbil5-ps, LOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069H01.T7 (MSMg01no069_h01.b1)MSMg01-069H01.TJ (MSMg01no069_h01.g1)
ACCAG293697AG293698
length700731
length of high quality
(start - end)
177 (70 - 246)---
definitionCHROMAT_FILE: MSMg01no069_h01.b1 PHD_FILE: MSMg01no069_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:12 2005CHROMAT_FILE: MSMg01no069_h01.g1 PHD_FILE: MSMg01no069_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCAAAAATTGCGGCGCTAAACGACTCCTATTTTCAAAGGAGGGGCGGA
ATTCTCTAGTTTTCAACAAAACTGCCCAGTGAACAAGTGAACTAGCTACT
GGACAGTTACATCTTTCATTTCTGTGCCCGTCTTAGACAGGCAGGTGGTA
GCACACACAAGATATGGCAAACAAGATTTCTTATAAGCTGCAAGACTTCG
GTGCATTCTGAAATTTCCCGTATTTTGGTATTTCCTGGATTACCCAGACA
TTAGACATTGGTGCCATCCACTATACATAAGTACAGATTTTAGAACCTGG
ACAGAGCTGAGTTACTGTATTTCTCCATCCTTCAGGTGTGTGTTAGAAGT
GTAAGCAAAATGTCAAGCTCGTCCCATGGCTATACTCACATATTTGTTCT
TCTAATATCGTATCGTTGTTTTGCGAGGTATCCGCTTTATTTAATTATAC
TAGCTATCCCCACTGAATATGTCTTGATCACGGCTTCCCACCCTTTCCGC
CCTCGTCCCCCCTTGTTTTTCACGAACGCCGTTCTGATATTCCCCATGTA
CCACAGGCCCGACTTTTTTTCCTTATCCCGCTACCTTTTCTCGCCCTTTT
CACCCCCTCTTTTCCCACCCCCATCCCTCTTTCCCTTTCCTCCCCCCTAT
TTCCCCCTCCCCTTTTTTTCCCCCCCCTTCTGTGTCCCTTCCCCTTTTTG

TTTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTCCCCAGAAATCATATTCTGAATACATATATTA
AAAAAACATGTTGAGAAAACTAATGACCCCCTTAACAATGAACTATGCAC
TCATACATACGGATTCTCACAAAGAGAATTGAACGTGGCTAATACGTCTC
CTACACTGTGCTCTTCATCCTTACTATTTAAAGAAACGTGAACTACTACC
ACGTCTGAGATTTCCTCTTACCCTACCCGGACCGGCTAACATGATACCTT
CCGCCTGAAGCCTATGTTGGCGATGTTTGTGTTATATGAGGAACTTACGG
CTACTATTACGCGCGATTTTTTTTTTCTCCCCCCCCCCGCCCATATTATG
AACAGTTTTTTAATCCCTTATCCTGCCTTTTAACAAATAATATCCACACT
TCGTCTTTTTGGCACCACCCTTGATTATCCCCTCGCCCTCACCATATTCT
CTTACCATCCCAAGACCTTTTGTACACCCTTTTATTCCCACTCTTTCCAG
CTGTGCATTTCCCCCCTCATTTATTTCTTATTCCTTGCCCCCCCCCCTCC
CCCCCCCATTTCTTTCCCCCCCCCTTTTATTCTCCCGCTTCACTACTTAT
TATCAACTCTACTGCAACCCCAAATCTACGTCCGGCTTCATTCCCCGTAA
CTCCCGCTCTTCAACCTTCCCTTACTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_h01.b1 MSMg01no069_h01.b1 CHROMAT_FILE:
MSMg01no069_h01.b1 PHD_FILE: MSMg01no069_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:12 2005
         (177 letters)



>mm_chr10_45049661_45050237
          Length = 577

 Score =  335 bits (173), Expect = 1e-96
 Identities = 176/177 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgcccagtgaacaagtgaactagctactggacagttacatctttcatttctgtgccc 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 377 aactgcccagtgaacaagtgaactagctactggacaattacatctttcatttctgtgccc 318

                                                                       
Query: 61  gtcttagacaggcaggtggtagcacacacaagatatggcaaacaagatttcttataagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtcttagacaggcaggtggtagcacacacaagatatggcaaacaagatttcttataagct 258

                                                                    
Query: 121 gcaagacttcggtgcattctgaaatttcccgtattttggtatttcctggattaccca 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcaagacttcggtgcattctgaaatttcccgtattttggtatttcctggattaccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)