BAC Information

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BAC

Clone NameMSMg01-069O10
Chromosome10 (Build37)
Map Location 27,950,795 - 27,950,973
singlet/doubletsinglet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069O10.T7 (MSMg01no069_o10.b1)MSMg01-069O10.TJ (MSMg01no069_o10.g1)
ACCAG294050AG294051
length696808
length of high quality
(start - end)
179 (70 - 248)---
definitionCHROMAT_FILE: MSMg01no069_o10.b1 PHD_FILE: MSMg01no069_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:47 2005CHROMAT_FILE: MSMg01no069_o10.g1 PHD_FILE: MSMg01no069_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTACTCTCACAACTCCTGAGAAGGGCAGTACCCTGGAAAACATTT
ATTTTGTAAAACTAATATCCCTTTAACATAAATCTAAAAATATTTAAGTA
ATATAACTCCTCTTATTTCCAGGACATGCTCAACCTTACAATCAGGAAGA
AAATAATAATACTAACAATTGAGTGCCAAAATATTTATAAGGTCACAGAA
GCAAGCTCTAACAGACTTGGTTTGTACACTGCATTTAATCTCTGCATTTC
AGGAAAGAGAAGTGTGTTTGTAGACTCACACCTCCATAAGCAGAGAAGAC
AGAATTTTATTTCTCTGCTCCTCCTCGTCTCCTTTAATTTTTATCACTCA
GAACCATTTCCTAATCACAGAACATTGAGCTCTGATTACAGCTGCTACTA
TATAATATCAAGGTCATTTAACAATCACCTTCTAACCTATTTCCGATGAG
CATAAGTTTCCATACCTGTGGCCATTGCTGATGCCCATTACCCATATTCC
ATTTCTTTTGCGCCTCCTACCTCCCTTTTGCTTCCTGCTTTATTATCTCT
AACCTGATCTCTTTCAATGTCTTCCTATACCCTCTTTCGTGACTTTTTTC
CAAATATCATAAACGGATTTCTTTATTTCCTCATTATCCGATTTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTGCCTTGGATAAAGAGGACTTCTAGCATGGAAATGAGCCCC
TGTCCCCTGCATAGTAGGCGCCATTGGTTTCATTTTCCTGTCAGACTCCT
CTTGCTATGAAGGAGAGTGTCATCTGTTCCGCTCGTGTCTAATGCTAGTC
ATTTTTGTAGTAGAATATGCTGTGTGGACTGGTAAACCCCTCTTCGAGCT
CCTGTTAAGCTGCTATTGCTTCGTGTTCTCGTTTCTCTTATTTCTACTCT
CGGCTCTTCGATCATGCTCATCGTCTTTCTTCTATCGATGTCCCACATCT
TCTATCGTTCCTCGTCTGTTTATTTTTTTTTTTTTTCACCCCCTCATCCC
CCCTACATTGTTTTGTTTATAATCTTCCTCTTATCCGCTTTTCCCCTCTC
ATAAAAACATAATAAAAAATTCTTGCGGGGGTGTTTGTGGGGCGTTTCCN
CGCAATTCCCTTCCAACTTCTCCCAATCTCTTAATCAGCATTTCGTGATT
TTCCCCCTATTATTTTGCGATCATCTATCATCCCCCTCTCCATATATATC
TTTCCCTTAATTTCCTCCGTCCTTATCGCCTCCTTCGCTTCTATCTTTTC
CCCTCCTACATTGATCCCCTTCCTCCGTTACCTCCGTTCGCTCGCTTCTT
ATTATTTGATTGCGATATCCTCCCTACTATTCTTTCCGCCTTATTCCGCT
TAGTACGATATCATACACTTCTCTTACCTATACCTATTTGAGATTTTTCT
CCATATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_o10.b1 MSMg01no069_o10.b1 CHROMAT_FILE:
MSMg01no069_o10.b1 PHD_FILE: MSMg01no069_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:47 2005
         (179 letters)



>mm_chr10_27950595_27951173
          Length = 579

 Score =  317 bits (164), Expect = 2e-91
 Identities = 176/182 (96%), Gaps = 6/182 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgagaagggcagtaccctggaaaacatttattttgtaaaacta--at-atccctttaa 57
           |||||||||||||||||||||||||||||||||||||||||||||  || ||   |||||
Sbjct: 379 cctgagaagggcagtaccctggaaaacatttattttgtaaaactaacataat---tttaa 323

                                                                       
Query: 58  cataaatctaaaaatatttaagtaatataactcctcttatttccaggacatgctcaacct 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cataaatctaaaaatatttaagtaatataactcctcttatttccaggacatgctcaacct 263

                                                                       
Query: 118 tacaatcaggaagaaaataataatactaacaattgagtgccaaaatatttataaggtcac 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tacaatcaggaagaaaataataatactaacaattgagtgccaaaatatttataaggtcac 203

             
Query: 178 ag 179
           ||
Sbjct: 202 ag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)