BAC Information

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BAC

Clone NameMSMg01-070F23
Chromosome10 (Build37)
Map Location 81,927,129 - 81,927,706
singlet/doubletsinglet
Overlap genenone
Upstream geneBrunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611
Downstream geneGm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11, Slc41a2, D10Wsu102e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070F23.T7 (MSMg01no070_f23.b1)MSMg01-070F23.TJ (MSMg01no070_f23.g1)
ACCAG294410AG294411
length750681
length of high quality
(start - end)		640 (111 - 750)604 (78 - 681)
definitionCHROMAT_FILE: MSMg01no070_f23.b1 PHD_FILE: MSMg01no070_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:25 2005CHROMAT_FILE: MSMg01no070_f23.g1 PHD_FILE: MSMg01no070_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAAAAAATTTNNNNAAATTTACAAAAAAACCCCCNNNNCCNCCCCNNN
NNCTTAAATNNNNNTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCCTAGCACTAAATGCCTTCATAAAGAAATTG
GAGAGATCCTATACTTACTTAACAACACACCTGAAATGTCTAGAGCAGAA
AGAAGCAAACACAATTAAGAGATATAGGTGGCAGGATATAACCAATTTAG
GCTAACTAAAGGGCACAGAGTTGGAATTTTGATGGGGATTTCTTTGAATC
TGTAGATTGCCTTTGATAGGATGTCCATTTTTACGATGTTAATTCTGCCA
ATCCATGAGAAGGGTTGATCTCCCCGTTTTCTGAGATCTTCTTCAACTTC
TTTCCTGAGAGACTTGAAGTTATTGTTATACAGATCTTTCACTTGCTTGG
TTAGAGTCACACCAAGATATTTTATATTATTTGTGACCATTGTGAAGGGT
GCCATTTCTCTAATAACTTTCTCAGCCTGCTTATTCTTTGAGTAGAGGAA
GTCTACTGATTTGTTTGAGTTGATTTTATATCCAGCCACTTTGTTTAAGT
TGTTTATCAGCTGGAGAAGTTCCCTGGTAGAATTTTTGGGTTCCCTTATG
TATATGATCATATCCTCTGTAAATAGAGATATTTTGACTTCTTCCTTTGC
AGCTTGTATCCCTTTGACCTCCTTTTGTTGGCTAATTGCTCTAGCTAGAA


NNCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATTTTCTTCACAGTTGTTCATT
TCTAAACTATGAAGATTTGCATCTGCCCTTAGAAATTTACCCTTTTCTTC
ATAATAACTAGTTTCCTAGAAATAATAATAGAAATGTTAGAATTCTGAAA
TCATGTGGTAATACAAGTTTGAAAGTTTACTCTTCTACAATAAAAAAATG
GAACTAAGATTACCTAAATGATATTCCTACCACCAGATCATGTTGCAAAG
TCTGAGAATTGGAACAAAATCACTTTTTTTTTTTTTTTTGCTGTGGCAGT
GTTTTCTAGTATGACACACTGGAAGAGTTACACTACTGCTTTCCGCTCTC
AATAACATGGGTAGATTAAGAATTAGATTTTGATTATCAGGTTTCCCATG
ATTCATCTCTATTCTCTCCTAAATATAATGTTCAAACTAGATTCCTTCAC
ATGGTTGAAATAACAACTAAGGCCTGTATTCTGAGTCTAATGTAAACTTC
TAAGAGGAAATATTGAGACATGATCATTTTAATTACATAATCAGATATTA
CTAAAAATGCCTGGTTGAAATATATTTCAACCATAATGATGAAATACCAT
AATGACAAGAAAACAACTTGTGAAAGAATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_f23.g1 MSMg01no070_f23.g1 CHROMAT_FILE:
MSMg01no070_f23.g1 PHD_FILE: MSMg01no070_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:25 2005
         (604 letters)



>mm_chr10_81926929_81927932
          Length = 1004

 Score = 1035 bits (535), Expect = 0.0
 Identities = 571/587 (97%), Gaps = 10/587 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattttcttcacagttgttcatttctaaactatgaagatttgcatctgcccttagaaatt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tattttcttcacagttgttcatttctaaactataaagatttgcatctgcccttagaaatt 260

                                                                       
Query: 61  tacccttttcttcataataactagtttcctagaaataataatagaaatgttagaattctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacccttttcttcataataactagtttcctagaaataataatagaaatgttagaattctg 320

                                                                       
Query: 121 aaatcatgtggtaatacaagtttgaaagtttactcttctacaataaaaaaatggaactaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatcatgtggtaatacaagtttgaaagtttactcttctacaataaaaaaatggaactaa 380

                                                                       
Query: 181 gattacctaaatgatattcctaccaccagatcatgttgcaaagtctgagaattggaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattacctaaatgatattcctaccaccagatcatgttgcaaagtctgagaattggaacaa 440

                                                                       
Query: 241 aatcacttttttttttttttttgctgtggcagtgttttctagtatgacacactggaagag 300
           ||||||||||||||||       |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatcactttttttttt-------ctgtggcagtgttttctagtatgacacactggaagag 493

                                                                       
Query: 301 ttacactactgctttccgctctcaataacatgggtagattaagaattagattttgattat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttacactactgctttccgctctcaataacatgggtagattaagaattagattttgattat 553

                                                                       
Query: 361 caggtttcccatgattcatctctattctctcctaaatataatgttcaaactagattcctt 420
           |||||||||||  |||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 554 caggtttcccacaattcgtctctattttctcctaaatataatgttcaaactagattcctt 613

                                                                       
Query: 421 cacatggttgaaataacaactaaggcctgtattctgagtctaatgtaaacttctaagagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cacatggttgaaataacaactaaggcctgtattctgagtctaatgtaaacttctaagagg 673

                                                                       
Query: 481 aaatatt-gagacatgatcattttaattacataatcagatattactaaaaatgcctggtt 539
           ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 674 aaa-atttgagacatgatcattttaattacataatcagatattactaaaaatacctggtt 732

                                                          
Query: 540 gaaatatatttcaaccataatgatgaaataccataatgacaagaaaa 586
           |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 gaaatatatttcaaccataatgatgaaataccataatgacaa-aaaa 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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