BAC Information

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BAC

Clone NameMSMg01-071F11
Chromosome10 (Build37)
Map Location 57,166,237 - 57,166,481
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
Downstream geneHsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071F11.T7 (MSMg01no071_f11.b1)MSMg01-071F11.TJ (MSMg01no071_f11.g1)
ACCAG295148AG295149
length681671
length of high quality
(start - end)
268 (49 - 316)245 (68 - 312)
definitionCHROMAT_FILE: MSMg01no071_f11.b1 PHD_FILE: MSMg01no071_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:42 2005CHROMAT_FILE: MSMg01no071_f11.g1 PHD_FILE: MSMg01no071_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTATCANGACGAGCCGCG
GAATTCTTTTTTTGCAAAAAAAACTATAAGGAAAGCTAAGAATTCTTATG
CAGTATTTTCAATCATGAATATAAAAGAAATGCTGAATATATACTGTACA
TGTAAGGACATGTTTTAAATGTTTTCACACAGTCCATTCCTTTAAGTCCA
AGGAAGTTTTGGGATGCTCTGGAGTTTTGTTTTTATAAATTACTATTATC
ATTCCTGTGGTTTAAAGGAAGAAACTAAGGATTAGTGGATACATATTACA
CAAGAGAAATGAATATTTTATTAGGCCTAGGGTTTCCCTGAGTTGAGAAT
CCTAAACACTTTTATGCATTTACATAAAATACATAATTTGCCTATATACA
AACTCTGAAGGTCTCAATTTTTACAACATTTTTTTAATTAGCTATGTGTG
TAAGAGGTATATGCATGTGAGTATGGATGACCTAGAGGCCAAAAGTGCCA
GATACCCTGATATTGGAGTTGTAAGCAGCCATGAATAGATTAGCATTGGT
CGCTAGAAATCAAAATCAGGTCCTCTACAAGAGCAATACTGTTCTTAAAC
ACTGAGTCATCTTTCTATCCTTATCCCTTTTCCAGCGAATGTTTTCTGAT
GGATACTATCAGGAATTTTAAAATACTTTCT
NCCCTCATGCAGTGGTAGCCTGGCGGCGCCTGGTACAAAACTGAGGTGAA
CTATAGAATTTCAAAAAAATTCTCCTCTGAGGAACAGACTGGGAGGAAGA
AGCAGCCCATTACCAGCCAGCTAATTGGTCAAGAAAAAAGCCAAAAGCGG
CTGGCGAAAGCCAGCGTACTGTTCAACCTCCGGGCAGTCGGTTTCAAGGT
CCGCCCTATGCGGAGCCCCCGCCCTGCGTAGTGCGTCAGCAATGCGCAGA
GAGATGCGCAGAGAGGCAATGCGCAGAGAGATGCGCAGAGAGGCAATGCG
CAGAGAGATGTTTTTATATGCAATGCGCAGAGAGATGCGCAGAGAGGCAG
TGTTTATAGAGGCAGCGCGCACAGAGGCAGTGCGCATACTCATTCATTCC
CAGAGAGGAACAAAGGAAAATACAACAGGCATTTCCAGTCTTTGAAGGAG
CCGAGGGTGGGCGTGTCCACGCTCCGGTAGAATACGTACAGATTAAAGAA
CTCGCCGAGTCGGTCCGTAAATATGGAACCAATGCTAATTTTACCTTGTT
GCAGTTAGACTGGCTCGCCGGCCTGGTATTAACTCCTGCTGACTGGCAAA
CGATTGTAAAAGCCGTTCTCCCTATAATGTTCATATATATGGTATGTAGA
TCGCTTTGTCTCTAAGTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_f11.b1 MSMg01no071_f11.b1 CHROMAT_FILE:
MSMg01no071_f11.b1 PHD_FILE: MSMg01no071_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:42 2005
         (268 letters)



>mm_chr10_57166017_57166684
          Length = 668

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 21  aaaaactataaggaaagctaagaattcttatgcagtattttcaatcatgaatataaaaga 80
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 221 aaaaactataaggaaagctaagaattcttatgcagtattttcaatcatgaatataataga 280

                                                                       
Query: 81  aatgctgaatatatactgtacatgtaaggacatgttttaaatgttttcacacagtccatt 140
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 281 aatgctgaatatatactgtacatgtaaggacatgttttaaatgtttttacacagtccatt 340

                                                                       
Query: 141 cctttaagtccaaggaagttttgggatgctctggagttttgtttttataaattactatta 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cctttaagtccaaggaagttttgggatgctctggagttttgtttttataaattactatta 400

                                                                       
Query: 201 tcattcctgtggtttaaaggaagaaactaaggattagtggatacatattacacaagagaa 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tcattcctgtggtttaaaggaagaaactaaggattagtggatacatattacacaagagaa 460

                
Query: 261 atgaa 265
           |||||
Sbjct: 461 atgaa 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)