BAC Information

Click to search

BAC

Clone NameMSMg01-071K11
Chromosome10 (Build37)
Map Location 57,203,590 - 57,203,968
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
Downstream geneHsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071K11.T7 (MSMg01no071_k11.b1)MSMg01-071K11.TJ (MSMg01no071_k11.g1)
ACCAG295385AG295386
length687681
length of high quality
(start - end)
375 (51 - 425)395 (77 - 471)
definitionCHROMAT_FILE: MSMg01no071_k11.b1 PHD_FILE: MSMg01no071_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:08 2005CHROMAT_FILE: MSMg01no071_k11.g1 PHD_FILE: MSMg01no071_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTTCTTCTATATTTGCGGCGCTATACGACTCCTATAGTGCGAGAATCC
GCGGAATTCAATCTTATTCTCAGAATTTTTTGTCTTAAAATTCTGTTTTC
TTTTTAATTTTATACTAATTCACTTTACATCCTGCTCACTGCCTCCCTCC
CAGTCACTCCTCCCATAATCCTTCCCCCATCCCCTTCTCCTCTGAGCAGG
TGGGGACCCCCTGTGTATCCCTCCCATCCTGGCATTTTAAGCCTTTACAG
GTTGGGCACTTCCTCTCCTACTGAGGCTAGAAAAGCCAGCCCAGCTAGAA
GAACATATCCCACATACAGCTTTTGGGATATCCCTCACTACAGTTCTGTG
GGACACACTTGGAGACCAACTTTCACATCAACATATGTGAAAGAGTCCTA
GGTCCAGCCCATGTATGTTTTTTGTCTGGTAGTTCAGTCTCTGAGAGCCC
CAAGGGTCCAGGTTAGATGATTCTGTTCCTACGATGTCCCTATGCCCTTT
TGTGTAGAAATCCTTCCCCTAATCTTTTTTAATAGTCCCCAAGTTTCTTC
CACAGGTTGGATGTATATGTCTGTGACTCATTTCATCTTTTGTTAGGGAT
CCTCATAAATGAATTACTGCTCCTGACTTGAATATATAATATTAAAATCA
TTATAAACGGCTAGATTTTGAAATATGTTCTATGTAA
TTTATCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGGACTCCACAGACATAGACAGC
CATCGTTGGACTTGCCTGTAAGCAACTCTAATTAATCCCATATGTATGCT
TGTGTGTATAATATATTCATAAATACATACATAAATCATATATAATATAT
AATGTATATATGGTGATGTATATAAAGCATATAAATGAGTATATGTATTC
ATTTTATCAATTCTATTTCTCCAGAGAACCCCGGCTGATACAGAATACAT
ATTTTTGTAAAACCTCCCTTAATGATGTATTATCCCATTTAACGTAATGT
CACCTTTTTGTGCTAGATTATAATAACTTATTGAATTTATACTAGATTTT
GAAAATGTTTAATAGAAACATAGTTTCTGTAATGCCTTGTGTATGTATAC
CACCTCTCTATTTTTTGTTAAATAAATCAGTGAATGCTTAAGCATATTTT
TGCTAACCATCTGCTTTGTCTTCTACGACCTCCAACTCTGGATTAGTTGA
TCCTCCCTTGATCTCCCATAACTTGTATAAATCTGGATTCAATATATTTT
ACATATTGAAATTGATCATATTGCCCCGCAACCCCCTTATTGTCCTGGTT
AACAACTTAACCTCGAGTCCCCATGATTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_k11.g1 MSMg01no071_k11.g1 CHROMAT_FILE:
MSMg01no071_k11.g1 PHD_FILE: MSMg01no071_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:08 2005
         (395 letters)



>mm_chr10_57203174_57203968
          Length = 795

 Score =  717 bits (371), Expect = 0.0
 Identities = 377/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 17  tagacagccatcgttggacttgcctgtaagcaactctaattaatcccatatgtatgcttg 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tagacagccatcgttggacttgcctgtaagcaactctaattaatcccatatgtatgcttg 736

                                                                       
Query: 77  tgtgtataatatattcataaatacatacataaatcatatataatatataatgtatatatg 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tgtgtataatatattcataaatacatacataaatcatatataatatataatgtatatatg 676

                                                                       
Query: 137 gtgatgtatataaagcatataaatgagtatatgtattcattttatcaattctatttctcc 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gtgatgtatataaagcatataaatgagtatatgtattcattttatcaattctatttctcc 616

                                                                       
Query: 197 agagaaccccggctgatacagaatacatatttttgtaaaacctcccttaatgatgtatta 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agagaaccccggctgatacagaatacatatttttgtaaaacctcccttaatgatgtatta 556

                                                                       
Query: 257 tcccatttaacgtaatgtcacctttttgtgctagattataataacttattgaatttatac 316
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 555 tcccatttaacgtaatgtcacctttttgtgctagattataagaacttattgaatttatac 496

                                                                       
Query: 317 tagattttgaaaatgtttaatagaaacatagtttctgtaatgccttgtgtatgtatacca 376
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 495 tagattttgaaaatgtttaatagaaacatagtttctgtaatgccttgtttatgtatacca 436

                              
Query: 377 cctctctattttttgttaa 395
           |||||||||||||||||||
Sbjct: 435 cctctctattttttgttaa 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)