BAC Information

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BAC

Clone NameMSMg01-072N14
Chromosome10 (Build37)
Map Location 78,988,611 - 79,182,140
singlet/doubletdoublet
Overlap genePpap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2
Upstream geneOlfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029
Downstream genePolrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072N14.T7 (MSMg01no072_n14.b1)MSMg01-072N14.TJ (MSMg01no072_n14.g1)
ACCAG296290AG296291
length737733
length of high quality
(start - end)
137 (62 - 198)246 (72 - 317)
definitionCHROMAT_FILE: MSMg01no072_n14.b1 PHD_FILE: MSMg01no072_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:43 2005CHROMAT_FILE: MSMg01no072_n14.g1 PHD_FILE: MSMg01no072_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,182,004 - 79,182,140)(78,988,611 - 78,988,856)
sequence
AATTTGCGGCGCTAAACGACTCCTATTTCTAGAAATCGGCGGAATTCTGC
CAAGAACCCGGCTCCTCTGGGTCCCTGTAGACTGCATGCCGCAGGCAACC
AATACCCAAGGGCCCTGACATCCCACAGCCCTGCCTCCCTTGCTGTTTGC
AATGACTCCCCCTCTCCCTCCTGCCGGGCAGGGAGACAAAGTCACCAACC
TAGTCACCAATCAGTAAAGTCCCATCCAGATGTCAGGCATGCCAGCCAAG
TCACAGGACTGATCCACTAGGGAACCAAGTCAGAGCCAACACGGGGAGCT
GCCCAGTCCCTGTGTTTTTATGGAAGACCCCTGCCCACTACTCGGCATAA
GGAATTAAAAAATACACATATTATGTACATATATATTGCCCACCTGAGGT
ATAACAATGCCCGAACGACTTTTCCTATCCTCGTGGTAGGATCTTCTTCT
TCTTTTTTTAATGTTCAATTAATACTGTTTGGATTTATTGTCACACACCT
GTTATCCCTGTTACTCATGAAATTGAGTCTCGATGATGTTCATTTCATGG
TTCTCTGAATATCTTAGTGAATATTTTGTCTTAAAACATACTGTAAAAAT
TGTCCCTGATGTTGTGCATTTTCTCTTCTATTTTTGTCGCAACCTGGTTC
TTCTTTTATTCCATCAATGCTATATGTTTAAAACCTACCTGGTCGTTTTT
AACATCCCTTTTATTTTTTCCGTATATCTTTTTTTCA
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATGGGCCTGCTGGCTTTCGATAATTGCC
AGTGGCATCCAGAATCCTGGTGACCTGATCCTGACCTAGCCTCTAAGAAG
AGGAAGGAAATGGAGAGGGGGAGTTGGTACTTCAGACTGTCCCCCATGCT
CCCAGACCCAAAGACCTGACGAGTATATAAGGAGCCTGCCTATTCCCAGA
AAGACGCACACCTTGTCCTGAGATACAACAAGACCTGTCACCCCTCCTGC
TGCCCCTGGGAGACTGGTCTTGTCATCCTGGGAGCATGGTCACGCACCGA
TCTAGTACTGACCATGAAGGCATCCTGGGAGCATGGTCACGCACCTATCT
AGCACTGACCATGCAGGGTCTCTGTGTTCTAAGGTGACCTAGGATAAGCA
TCCATCACACATGTAGGAAGGTCACAGTGGCTATAAGGCCTTTGTCTTGG
CCAACATAATAGACTCCTATGTCAGGTGTCCCCTAAGTCTCTGCTAATAC
TGGCTGGTCCAGCCCAATGCCCTGATGAGTAAGGTGTTATAGGACTTTCT
TCCTCACAGAAAAATTTGTGAAATCATCATGTCTGTTTAGATACATTTGT
TTATAACTTATTACACTTCTCTTCTCTTGAACCAGCATCTTGAAATTGTT
TTGAACCAGAAGGTATGGCCCAATCCCGGGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_n14.b1 MSMg01no072_n14.b1 CHROMAT_FILE:
MSMg01no072_n14.b1 PHD_FILE: MSMg01no072_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:43 2005
         (137 letters)



>mm_chr10_79181804_79182340
          Length = 537

 Score =  257 bits (133), Expect = 2e-73
 Identities = 136/137 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctctgggtccctgtagactgcatgccgcaggcaaccaatacccaagggccctgacat 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 337 ctcctctgggtccctgtagactgcatgccgcaggcaaccaatacccaaaggccctgacat 278

                                                                       
Query: 61  cccacagccctgcctcccttgctgtttgcaatgactccccctctccctcctgccgggcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cccacagccctgcctcccttgctgtttgcaatgactccccctctccctcctgccgggcag 218

                            
Query: 121 ggagacaaagtcaccaa 137
           |||||||||||||||||
Sbjct: 217 ggagacaaagtcaccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 537
Length adjustment: 8
Effective length of query: 129
Effective length of database: 529
Effective search space:    68241
Effective search space used:    68241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no072_n14.g1 MSMg01no072_n14.g1 CHROMAT_FILE:
MSMg01no072_n14.g1 PHD_FILE: MSMg01no072_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:43 2005
         (246 letters)



>mm_chr10_78988411_78989056
          Length = 646

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgggcctgctggctttcgataattgccagtggcatccagaatcctggtgacctgatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgggcctgctggctttcgataattgccagtggcatccagaatcctggtgacctgatcc 260

                                                                       
Query: 61  tgacctagcctctaagaagaggaaggaaatggagagggggagttggtacttcagactgtc 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacctagactctaagaagaggaaggaaatggagagggggagttggtacttcagactgtc 320

                                                                       
Query: 121 ccccatgctcccagacccaaagacctgacgagtatataaggagcctgcctattcccagaa 180
           |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 321 ccccatgctcccagacccaaagacctgacgagaatataaggagcctgcccattcccagaa 380

                                                                       
Query: 181 agacgcacaccttgtcctgagatacaacaagacctgtcacccctcctgctgcccctggga 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacacacaccttgtcctgagatacaacaagacctgtcacccctcctgctgcccctggga 440

                 
Query: 241 gactgg 246
           ||||||
Sbjct: 441 gactgg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)