BAC Information

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BAC

Clone NameMSMg01-073B03
Chromosome10 (Build37)
Map Location 39,623,873 - 39,624,319
singlet/doubletsinglet
Overlap gene4930547M16Rik
Upstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332
Downstream geneLOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073B03.T7 (MSMg01no073_b03.b1)MSMg01-073B03.TJ (MSMg01no073_b03.g1)
ACCAG296459AG296460
length696699
length of high quality
(start - end)
478 (44 - 521)483 (79 - 561)
definitionCHROMAT_FILE: MSMg01no073_b03.b1 PHD_FILE: MSMg01no073_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:01 2005CHROMAT_FILE: MSMg01no073_b03.g1 PHD_FILE: MSMg01no073_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGCCATGCCTAGTCTATATAATGAGTTCCAGGCTAGCCAGCACTA
GGTGGCTATATGTACCCTACCACAAAAACAAAAACAAACAAAACAAAAAT
AAAATTAAATTCCTTAGTGTGTATGTGTATTAATTAGATTACGTATACAC
ATTCTGTGTATGCATGTGGAGGTCAGAAGACAACTTAGGAGAATCTGGTC
TCTCTTTGCACCTTGTTGCAGCAGGCTCTTTCTTGTTTCTGCTGTTGCTT
GCATACTCCAGGCTAAGTGGCCTGTGAGCTTCTAGGCAATTCTCCTGATC
TTGCCTCCCATCTTACTGCAGGAGTGCTGGGGTTACAGATGTGTACCACT
GCATCTACCCATTTTTCTTTTTGACCTGGGTCCTGGGGGTCAAGTGTGTA
TGACAAGCACTTTGAGCAATCTTGCCAATCCTTGGCTTTATTCTTATAAA
AAATAGTCAAATTGCCCAAGGGAGTCAGAAAATTAATATTACTTTTAAAT
GGATTTCAGAATTGGCACAATGATTCTTTAAAATTGATAGAAGTGATTTT
TTAATGTAAAACATCTATATTTGAGCTTAATATGAGAAATAGTTTATAAA
TTTTATCAAAAGTTCTTAATTCTTAATAATGCTTGATAAATATTGT
NNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCACTGAAGTAGCAGGCCTG
AGAGAACTTGAAAGAAAATGGCGAATAGAACAGGACTGCTCCCCAAAATA
AGGGAGGTTTTCATTGCTACCATGGTAAGAGAAATGGATTATTAACCAAC
AGGAAACAAAGCCTGGGGCTACTGGGTTAATTCCTACCAGACTTAAAATC
AACCTCAGCATAAAAATAAAACGCAAGTGGTGGGAATTACTAATTTATTC
TTATTGACTTTAAGGCAAATCCTATTGTCTTAGTGCTGTTCTATTGCTAG
GAAGAAGGACCACGGCAATTCTTATAAAGGAGAGCATTTAACTGGGGCTG
ACTTACAGTTCAGAGTCTTAGTCTATTAAGCTCATAGCAGGGGACAGGAG
CTGAGAGTTCTACATCCAGATCAGCAGGCAGAAGAAAGAGAGAGACACTG
GGCCCCTACTTCAGCATCTGACACTTCATAGCCCACCCCTAGTGGCACAC
TTCCTTCAACAGTCATAGCTACTCTAACAAGGCCACACATTCTAGTCCCT
TCAAATTGCGCCTCTCCCTATGAGCCAATGGGAGCCACTTTCATTTAAAC
CACCCACCCTATAATTTAAATAGGAAGAGACTAAGGCATCCTCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_b03.g1 MSMg01no073_b03.g1 CHROMAT_FILE:
MSMg01no073_b03.g1 PHD_FILE: MSMg01no073_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:01 2005
         (483 letters)



>mm_chr10_39623873_39624755
          Length = 883

 Score =  849 bits (439), Expect = 0.0
 Identities = 445/447 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcactgaagtagcaggcctgagagaacttgaaagaaaatggcgaatagaacaggactg 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 447 tctcactgaagtagcaggcctgagagaacttgaaagaaaatggagaatagaacaggactg 388

                                                                       
Query: 61  ctccccaaaataagggaggttttcattgctaccatggtaagagaaatggattattaacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctccccaaaataagggaggttttcattgctaccatggtaagagaaatggattattaacca 328

                                                                       
Query: 121 acaggaaacaaagcctggggctactgggttaattcctaccagacttaaaatcaacctcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acaggaaacaaagcctggggctactgggttaattcctaccagacttaaaatcaacctcag 268

                                                                       
Query: 181 cataaaaataaaacgcaagtggtgggaattactaatttattcttattgactttaaggcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cataaaaataaaacgcaagtggtgggaattactaatttattcttattgactttaaggcaa 208

                                                                       
Query: 241 atcctattgtcttagtgctgttctattgctaggaagaaggaccacggcaattcttataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 atcctattgtcttagtgctgttctattgctaggaagaaggaccacggcaattcttataaa 148

                                                                       
Query: 301 ggagagcatttaactggggctgacttacagttcagagtcttagtctattaagctcatagc 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 147 ggagagcatttaactggggctgacttacagttaagagtcttagtctattaagctcatagc 88

                                                                       
Query: 361 aggggacaggagctgagagttctacatccagatcagcaggcagaagaaagagagagacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  aggggacaggagctgagagttctacatccagatcagcaggcagaagaaagagagagacac 28

                                      
Query: 421 tgggcccctacttcagcatctgacact 447
           |||||||||||||||||||||||||||
Sbjct: 27  tgggcccctacttcagcatctgacact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)