BAC Information

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BAC

Clone NameMSMg01-073G12
Chromosome10 (Build37)
Map Location 10,632,131 - 10,793,331
singlet/doubletdoublet
Overlap geneGrm1
Upstream geneLOC100039238, LOC665110, 9130014G24Rik, Rab32, EG382450
Downstream geneShprh, Fbxo30, Epm2a, EG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073G12.T7 (MSMg01no073_g12.b1)MSMg01-073G12.TJ (MSMg01no073_g12.g1)
ACCAG296714AG296715
length713706
length of high quality
(start - end)
298 (129 - 426)394 (74 - 467)
definitionCHROMAT_FILE: MSMg01no073_g12.b1 PHD_FILE: MSMg01no073_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:27 2005CHROMAT_FILE: MSMg01no073_g12.g1 PHD_FILE: MSMg01no073_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,793,034 - 10,793,331)(10,632,131 - 10,632,524)
sequence
NCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGAGATCCG
CGGAATTCCTCATGTATCCGATTTTAGGATTTTCTCTTTTGTTAACTTCA
TAGCCAATATGTTACTGGTTCAGGCAAACATGGTTAGTTTTATAACAAGT
TCTTAAGCAATTCAAATAAAAGCCTTAATTGGCAAGCAAAACAAAATAAT
TTGAGGAACATAAATTCTTTGGTTACCAAATAACAGTTCTTTATCTTTTA
ATGTCAGAGTTCCAGAGTGTCCAGAATTTACTCTGTAGCCAGACTGACTC
AAATTTTAATTCTCTTACTTCAACCTTACAAGGTAGGAGAATGGGCACCA
TATCTGGCGTATTTCCTTTCTAACAAAATTTACTAATGAACATACGAGTC
AACTATGAAACCACATGCTTTTCTAGGTGTTAAGAACATAACTCAAAATA
ACAATAAACATAACTGTTATCATTACTAATGTTATTGTCATAGAGTCTTA
AACAATTAGAAGAACTAGAGATAAATAAGTTGTTATAGGCCCTTGGATTT
TTTCTTTCTAATAATATTTATTTAACCAAACAATGATCTGTAATCAAATT
ATAAACTGTAACTTGTCAATCTTTTCTTTAAGTAAATTTAATGAGAATGC
ATTATTGGGTTCATATTTATAAATTGTATCACACGTGCTAAGAAGTATAT
CCCTTTTCTGAAC
TCGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCTGCTCCATCTTGGCTAGTGTATAC
TGGGTAATTAGAGGAACACATTAAGATCTATGTCTCTATGTTGAGTACAC
TCAGATAAGCTGGATGTGGCTAGAAACTGGGGTCCATGAGACTTAGTCAG
TATTGCACATGAATTCTGAATGAATTCTGAATATGTTTGATCACACATAT
GTTTGTCTTTAAACTTTCTTGGTCAGTGGATATTTTTAAGTGTGTACCTT
CCATTTGGGGATATAGTAGGTCCTTTATGTGAAATAAAATGTCCCATAAG
ATGTGAGTGCTGTGTGGTAGACTTACATAAATGTTCTAACCAGCACCTTC
CTTTTCTGTTTCCATCTGTACTGACTGGTTTTGTGTGTCAACTTGATACA
GGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGGAAATGTCTCCAT
GAGATCCAGCTGTGGGGCGTTTTCTCTATTAGTTATCTAGGGCAAAAGGC
CCCTTGTGGTGGCACCACCTTTGGTCTGGGCTCTATAAGAGAGCAGGCTC
AGTAAGCCTGGGTAATCAAGTTAGTAAGGAATTTCCCTTCATGGCCTCTG
CATCAGCTCCTGTCCTCTTACCTGCTTGGGTTTCAGTCCTGATTTCCTTG
GTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_g12.b1 MSMg01no073_g12.b1 CHROMAT_FILE:
MSMg01no073_g12.b1 PHD_FILE: MSMg01no073_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:27 2005
         (298 letters)



>mm_chr10_10792834_10793531
          Length = 698

 Score =  561 bits (290), Expect = e-164
 Identities = 296/298 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggttagttttataacaagttcttaagcaattcaaataaaagccttaattggcaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 catggttagttttataacaagttcttaagcaattcaaataaaagccttaattggcaagca 439

                                                                       
Query: 61  aaacaaaataatttgaggaacataaattctttggttaccaaataacagttctttatcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaacaaaataatttgaggaacataaattctttggttaccaaataacagttctttatcttt 379

                                                                       
Query: 121 taatgtcagagttccagagtgtccagaatttactctgtagccagactgactcaaatttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taatgtcagagttccagagtgtccagaatttactctgtagccagactgactcaaatttta 319

                                                                       
Query: 181 attctcttacttcaaccttacaaggtaggagaatgggcaccatatctggcgtatttcctt 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 318 attctcttacttcaaccttacaaggtaggagaatggtcaccatatctggcgtatttcctt 259

                                                                     
Query: 241 tctaacaaaatttactaatgaacatacgagtcaactatgaaaccacatgcttttctag 298
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 258 tctaacaaaatttactaatgaacacacgagtcaactatgaaaccacatgcttttctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no073_g12.g1 MSMg01no073_g12.g1 CHROMAT_FILE:
MSMg01no073_g12.g1 PHD_FILE: MSMg01no073_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:27 2005
         (394 letters)



>mm_chr10_10631931_10632724
          Length = 794

 Score =  731 bits (378), Expect = 0.0
 Identities = 390/394 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgctccatcttggctagtgtatactgggtaattagaggaacacattaagatctatgt 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tcctgctccatcttggctagtgtatactgggtgattagaggaacacattaagatctatgt 260

                                                                       
Query: 61  ctctatgttgagtacactcagataagctggatgtggctagaaactggggtccatgagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctatgttgagtacactcagataagctggatgtggctagaaactggggtccatgagact 320

                                                                       
Query: 121 tagtcagtattgcacatgaattctgaatgaattctgaatatgtttgatcacacatatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtcagtattgcacatgaattctgaatgaattctgaatatgtttgatcacacatatgtt 380

                                                                       
Query: 181 tgtctttaaactttcttggtcagtggatatttttaagtgtgtaccttccatttggggata 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctttaaactttcttggtcagtggatatttttaagtgtgtaccttccatttggggata 440

                                                                       
Query: 241 tagtaggtcctttatgtgaaataaaatgtcccataagatgtgagtgctgtgtggtagact 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 tagtaggtcctttatgtgaaataaaatgtcccataaaatgtgagtgctgtgtggtagact 500

                                                                       
Query: 301 tacataaatgttctaaccagcaccttccttttctgtttccatctgtactgactggttttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacataaatgttctaaccagcaccttccttttctgtttccatctgtactgactggttttg 560

                                             
Query: 361 tgtgtcaacttgatacaggctggagttatcacag 394
           ||||||||||||| ||||||||||||||||||||
Sbjct: 561 tgtgtcaacttgacacaggctggagttatcacag 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)