Query= MSMg01no073_k12.b1 MSMg01no073_k12.b1 CHROMAT_FILE:
MSMg01no073_k12.b1 PHD_FILE: MSMg01no073_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:47 2005
(341 letters)
>mm_chr10_3315470_3316216
Length = 747
Score = 526 bits (272), Expect = e-154
Identities = 323/342 (94%), Gaps = 8/342 (2%)
Strand = Plus / Plus
Query: 4 ggaattctgactctccctgagcacggtggcgcacacctttaacctcagcacttgggagca 63
|||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 204 ggaattctgattctcggtgagcatggtggcgcacacctttaacctcagcacttgggaaca 263
Query: 64 cagggcacatttctgaggatca-aagatggggccc-acagacataagacaagtgctgtaa 121
|||||||||||||||||||||| || ||||||||| |||||||||||||||||||| ||
Sbjct: 264 cagggcacatttctgaggatcataa-atggggccctacagacataagacaagtgctacaa 322
Query: 122 --cctggagctacagtttagccttaatgtttatatttgacttagttgaggaatatttcct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gacctggagctacagtttagccttaatgtttatatttgacttagttgaggaatatttcct 382
Query: 180 gaggcttagcgaggcatcttaactagtgatatttttatgtttaacttagttttgtgtttt 239
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaggcttagtgaggcattttaactagtgatatttttatgtttaacttagttttgtgtttt 442
Query: 240 ggactttgttggtgtttcattgtgt---agcgaaataagcagtcattctttcattggaag 296
||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||
Sbjct: 443 ggactttgttggtgtttcattgtgtggtagcaaaataaacagtcattctttcattggaag 502
Query: 297 gaacagggagcaccgcccacacccagtctttaccttccttgc 338
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaacagggagcaccgcccacacccagtctttaccttccttgc 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 747
Length adjustment: 9
Effective length of query: 332
Effective length of database: 738
Effective search space: 245016
Effective search space used: 245016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_k12.g1 MSMg01no073_k12.g1 CHROMAT_FILE:
MSMg01no073_k12.g1 PHD_FILE: MSMg01no073_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:47 2005
(381 letters)
>mm_chr10_3421791_3422571
Length = 781
Score = 687 bits (355), Expect = 0.0
Identities = 372/379 (98%), Gaps = 4/379 (1%)
Strand = Plus / Minus
Query: 1 atgagagagaagccgaggc--tgctccactgatggtcataagcaggtggctgagggattc 58
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atgagagagaagccaa--cattgctccactgatggtcataagcaggtggctgagggattc 520
Query: 59 tctgacagcggtgtcccagcatgctctccaaaggcaaatgaccaccctgaaggacatttc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tctgacagcggtgtcccagcatgctctccaaaggcaaatgaccaccctgaaggacatttc 460
Query: 119 actagtgcacacacagagtactaaggccacaccaccaataaggacattctctcgaggcag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 actagtgcacacacagagtactaaggccacaccaccaataaggacattctctcgaggcag 400
Query: 179 acaccatttatgctgagattttatgttagttacattttgatgttgcaatagtttgagact 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acaccatttatgctgagattttatgttagttacattttgatgttgcaatagtttgagact 340
Query: 239 tgagcaatggcagtattgatatgtactgcttcagggaagtttacattttttaatcttatc 298
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 339 tgagcaatggcagtattgatatgtactgtttcagggaagtttacattttttaatgttatc 280
Query: 299 tatacttaaggaaagatccagcaacatcttctacttctaacattactcatcaatgaaatc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tatacttaaggaaagatccagcaacatcttctacttctaacattactcatcaatgaaatc 220
Query: 359 cgaacatctatacttattg 377
|||||||||||||||||||
Sbjct: 219 cgaacatctatacttattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space: 287184
Effective search space used: 287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
