BAC Information

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BAC

Clone NameMSMg01-074D07
Chromosome10 (Build37)
Map Location 87,312,569 - 87,312,813
singlet/doubletsinglet
Overlap genenone
Upstream geneStab2, 1700113H08Rik, Ascl1, Pah, LOC100041517, ENSMUSG00000058934
Downstream geneIgf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074D07.T7 (MSMg01no074_d07.b1)MSMg01-074D07.TJ (MSMg01no074_d07.g1)
ACCAG297316AG297317
length679755
length of high quality
(start - end)
303 (47 - 349)246 (137 - 382)
definitionCHROMAT_FILE: MSMg01no074_d07.b1 PHD_FILE: MSMg01no074_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:30 2005CHROMAT_FILE: MSMg01no074_d07.g1 PHD_FILE: MSMg01no074_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCC
GCGGAATTCAAATCCAAACGACCAAAAATTCACATTCTTTCAATAAAAGC
ATCATCAGGCCTATCACAGCAATACCCCAGTCCCTGGTACCAACTTCTGT
CTTAGTTAGGGTTTTACTGCTGTGAACAGACACCGTGACCAAGGCAAGTC
TTATAAAGAACAACATTTCATTGGAGCTAGCTTACAGGTTCAGAGGTTCA
GTCCATTATCATCAAGGTGGGAGCATGGCAGCATCCAGGCTGTCATGGTG
CATGCAGAGCTGAGAGTTCTACGTCTTCATCCAAAGGCTGCTAGTGTAAG
ACCAGGCAACTGGTGTGAGACTCTTACCCCCACACCCAGTGACACACCTA
CTTCAACCAGGTCACACATATTCCAACAAGGCCACACCTCCAAATGGTGC
CACTCCCTGGTCCAAGAATATACGAACCATCACATTGCCCAAACCAAAAG
GCATTGATGTGGACCCCCTTACCTCTGATATCCTTGCAGCTACACATGTC
ACCCTTAAATTTCTCTAATCTCTCTCGGGCCTATGATTGTTGGTTTGGTC
TTGCCCTGTTTACCCTTCTGGCCCCTAGAGGATCCCTTTGGCTAAAGATT
CTGGCCCTTATTTCCCTCATATTGCCACC
NNNNNNNNNNNNNNNNNNNCCCCAANNNNACCCCCCCCCCCCTNNNNNNC
CCACCCTTCCCTCGATGATAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACACAGTAATGAG
GCATTCATTAATCCAATGGAGGATGAGGGAGACACAGTAGAAAGGAAGGG
GGTGGGTCTTAAGGACATTGGAAGGGAATGGAAGTATATGGTGATGCCTG
CTGAGTAATTGTGTAGTGTTGTCACAGAAGCAAGCCAAGATCTCACCCTT
GGAGAGGTCCAGAGTCCTTGAAGAACAAAAAGGAACACTGAGAAAATAAG
TATGCACCTATACAAATGGATACATACACTAGACGTTGAGTTGACCTTGA
TAACAGAGAGTGTGCATAGCATTTACCACTACACCATGATGTTTTTAATA
AATGCTGTAGTAGCTGCTCCTTGATTACGAACCCCTAGATCGCATAACAG
CATTATTAATGCTTTTTTCTAACCTCATATTCCTCTGCTACTCAAAGTGT
TATGACACCCACACGACCTTGCCCTACTCTGATGGCATACGGGTGTACAA
ATGTCTGCCTTCTTTGGTCTTCATCCCTTCACACCCCATACCCTGGTACT
TGATTATGCCTTGTATTTACTCTTTCACTGATTCCCTACAAACGACTGCA
CCGCTGATGGTAATGGACACCCCTTTCCGTCCCATCCTAAGCTATATCCC
CGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_d07.g1 MSMg01no074_d07.g1 CHROMAT_FILE:
MSMg01no074_d07.g1 PHD_FILE: MSMg01no074_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:30 2005
         (246 letters)



>mm_chr10_87312369_87313013
          Length = 645

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%), Gaps = 1/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacagtaatgaggcattcattaatccaatggaggatgagggagacacagtagaaagga 60
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 201 cacacagtaatgaggcattcattaatccaatggaggatgagggagaaa-agtagaaagga 259

                                                                       
Query: 61  agggggtgggtcttaaggacattggaagggaatggaagtatatggtgatgcctgctgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agggggtgggtcttaaggacattggaagggaatggaagtatatggtgatgcctgctgagt 319

                                                                       
Query: 121 aattgtgtagtgttgtcacagaagcaagccaagatctcacccttggagaggtccagagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aattgtgtagtgttgtcacagaagcaagccaagatctcacccttggagaggtccagagtc 379

                                                                       
Query: 181 cttgaagaacaaaaaggaacactgagaaaataagtatgcacctatacaaatggatacata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttgaagaacaaaaaggaacactgagaaaataagtatgcacctatacaaatggatacata 439

                 
Query: 241 cactag 246
           ||||||
Sbjct: 440 cactag 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 645
Length adjustment: 9
Effective length of query: 237
Effective length of database: 636
Effective search space:   150732
Effective search space used:   150732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)