BAC Information

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BAC

Clone NameMSMg01-074I07
Chromosome10 (Build37)
Map Location 104,397,901 - 104,398,186
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573, BC067068, Ccdc59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074I07.T7 (MSMg01no074_i07.b1)MSMg01-074I07.TJ (MSMg01no074_i07.g1)
ACCAG297555AG297556
length712708
length of high quality
(start - end)
275 (46 - 320)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no074_i07.b1 PHD_FILE: MSMg01no074_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:54 2005CHROMAT_FILE: MSMg01no074_i07.g1 PHD_FILE: MSMg01no074_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACCAGATCTCCAAAGAAGACTGAATACCAATACTCCTCAAACTA
TTCCGTAAAAGAGAAGCATAATCAACACTGTCTAATTCCTTGTATGAAGC
CACAATTACTCTGTTAACTGAGCCTCACAAAGTCCCAACAAAGAAAGAGA
ATGTTAGACCAATTTCCCTTATTAATATCAATGCAAAATTACTCAAAACA
ATTCTCACAAACTGAATCAAAGACCACTATCAATTAGGCTTCACACCATG
CATGCATAGCTCAATATACTTAAATCCATCAACATAATCCACTATATAAA
CAAACTCATTAAAGTGAATCCTATGATCATCTCATTAGATGCTGAAAAAG
TCTTTGACAATATACACACACCCTTCTTGTTAAAAGGCCTGAAGAGATCA
GTTCTTACAGTAATTTACCTAAAAATAACCATACCTATATACCACAAATT
ATCCGCCCATACCAATTTAATTGTAGCGATTCTTGCACTATTCCCTACTA
CCCTTCGCCATTACGATCTGTTTTTCCCTATCCCCCTACTTTCTTCCCCG
TCCTACTTGCAGCACCACCCCATGTTACCTCTTTTCTTCTATAGCATGCT
CGCACTTACTTTTTTTGCCTTCCTTTTAATCTCCCTTCCCCGCTCTCTTT
TCCCCTTTTCCG
CACAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGTATAAAATTTGTACCGTGA
TTTCATAGAGTAGGAGGTACTACCCCCTTCTTCCACCCAACTTACATAAA
TGTGTACATAAACTTCTGCTTCAAAACAGAAAATAAACTAGCTATGCTCA
TGGGATAAAAGGGTTTGTTACTGTATTTCACAATAGTATCTATTTGATTC
TGTATATATTTATTGCTGCATATAAAAACCAAGTCTGATATTTAACATTA
ACTTGAGCTGTGACAAATATATAGCTGTGATGTGGGATATATCCTCAGGT
ACTTATGCCCATAATACCGTGCAGAGCGTTGAGTTGAATATTCTTTAAAC
TATGACATTATATTCCACCCAAACCTCTTTTTAAATTTAACTACTTCTTT
ATTTTCAACTTTTATTGTATTTCTTCGCGTTTGTTCGCTTGTTCGCCTTC
TTTGACAAAGGATTTCTGCACGCATCCCTGCATGTCCCGCAACTATTTCT
GCATACCATGTTGACCTCCACTTCCTACATCCTACTGAATCTGCCCGAAC
GCCACTTTTACTGCCGCCCTTTTCCTCTAACAATCCGTCCTTTTCTCCCT
TCACTTTTTACAATTTACCCCCCTCACTCCTCCCTCCTATCCCTGCCCCT
TCCTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_i07.g1 MSMg01no074_i07.g1 CHROMAT_FILE:
MSMg01no074_i07.g1 PHD_FILE: MSMg01no074_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:54 2005
         (288 letters)



>mm_chr10_104397701_104398389
          Length = 689

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagtataaaatttgtaccgtgatttcatagagtaggaggtactacccccttcttcc-a 59
           ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| |
Sbjct: 486 cacagtataaaatttgttccgtgatttcatagagtaggaggtaccaccgccttcttccaa 427

                                                                       
Query: 60  cccaacttacataaatgtgtacataaacttctgcttcaaaacagaaaataaactagctat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cccaacttacataaatgtgtacataaacttctgcttcaaaacagaaaataaactagctat 367

                                                                       
Query: 120 gctcatgggataaaagggtttgttactgtatttcacaatagtatctatttgattctgtat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gctcatgggataaaagggtttgttactgtatttcacaatagtatctatttgattctgtat 307

                                                                       
Query: 180 atatttattgctgcatataaaaaccaagtctgatatttaacattaacttgagctgtgaca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atatttattgctgcatataaaaaccaagtctgatatttaacattaacttgagctgtgaca 247

                                                         
Query: 240 aatatatagctgtgatgtgggatatatcctcaggtacttatgccca 285
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aatatatagctgtgatgtgggatatatcctcaggtacttatgccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 689
Length adjustment: 9
Effective length of query: 279
Effective length of database: 680
Effective search space:   189720
Effective search space used:   189720
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)