BAC Information

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BAC

Clone NameMSMg01-075P08
Chromosome10 (Build37)
Map Location 89,471,790 - 89,472,076
singlet/doubletsinglet
Overlap geneAnks1b
Upstream geneTmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, LOC100043039
Downstream geneLOC544719, Apaf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075P08.T7 (MSMg01no075_p08.b1)MSMg01-075P08.TJ (MSMg01no075_p08.g1)
ACCAG298650AG298651
length689660
length of high quality
(start - end)
319 (55 - 373)546 (58 - 603)
definitionCHROMAT_FILE: MSMg01no075_p08.b1 PHD_FILE: MSMg01no075_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:45 2005CHROMAT_FILE: MSMg01no075_p08.g1 PHD_FILE: MSMg01no075_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTNNTTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTGTATATTCCTAAAATCATGTGTTACTGATAAAAC
ACTTGGGATAATCTTTATATACCTATTGTGAACATCTAAAAATTTGTGTA
AGACATGAGAAATTTTAAGGAGATGGGACACAGGAAGGCTGCAATTAATG
TGTGGGGTTTGATGTTTGTTTTATTTTTATGATGTGGGTGCCCCTACATT
TGGGGCATAGATGTTCAGAATTGAGATCTCATCTTGGTGGATTTTTTCTT
TGATGAATATAAAGTGTCCTTCAACATCTTTAAAATTTTGAAATTTGAAA
CTGGTTGAATTAATTTTTAGTGAAAAATCTCGCTTTATTAGATATTGCAA
AGGCTACTCCATCTTGTTTCTTGCTTGCAAAACCCTTTTCAGCTTTTTAC
TCTGAGGTAATATCTATCTTTGTTGCTGAAGCGCCCTTTTCTTTTTTTCT
CCCCCACTCCTGGATGAAATTCCACTTTGCGCTCTGCTTGCCCCCCCCCT
CTGCCTCCCCTCGCCTTTTCTCTGCCCCTCTCTTTCCCTTTATCTCCCTC
CCCTCCATTTCTTTTCCGTTTCTTTCCCTCCTCGTTTGTTCTTCTCCCCC
CTCTCCCCCCCCCCTCCCCCCCCTCCCCCTTTCCATCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGTCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTC
AGAAAATTGAACATAGTACTACCAGAGGATCCTGCAATACCTCTCCTGGG
CATATATCCAGAAGATGTTCCAACCAGTAAGAAGGACAAATACTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGTCCCTCAACAGAGGAATGGATACAGAAAATGTAGTACATTTACACAAT
GGAGTGCTACTCACCTACTAAAAAGAATGAATTAATACTGAATAAATTAA
AGATAATAATTTTAAGATATTTAAAATATGCTTACTTCTGGATGGGTAAA
TCATGTGCTTGGAAAATCCTTCTGGAATGAAATAAAAGCAGTGGTCTTGA
AAATGATGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_p08.b1 MSMg01no075_p08.b1 CHROMAT_FILE:
MSMg01no075_p08.b1 PHD_FILE: MSMg01no075_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:45 2005
         (319 letters)



>mm_chr10_89471586_89472304
          Length = 719

 Score =  408 bits (211), Expect = e-118
 Identities = 276/315 (87%), Gaps = 28/315 (8%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtatattcctaaaatcatgtgttactgataaaacacttgggataatctttat 64
           ||||||||||| ||| ||||||||| |||||| ||||||||||||||||||| |||||||
Sbjct: 205 gaattcttgtagatttctaaaatcacgtgttattgataaaacacttgggatagtctttat 264

                                                                       
Query: 65  atacctattgtgaacatctaaaaatttgtgtaagacatgagaaattttaaggagatggga 124
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 atacctattgtgaatatctaaaactttgtgtaagacatgagaaattttaaggagatggga 324

                                                                       
Query: 125 cacaggaaggctgcaattaatgtgtggggtttgatgtttgttttatttttatgatgtggg 184
           ||||||||||||||||||||||||||||||||| |||||||||||||      |||||||
Sbjct: 325 cacaggaaggctgcaattaatgtgtggggtttgttgtttgttttatt------atgtggg 378

                                                                       
Query: 185 tgcccctacatttggggcatagatgttcagaattgagatctcatcttggtggattttttc 244
           ||||| ||||||||||||||||||||||||||  ||||||||||                
Sbjct: 379 tgcccttacatttggggcatagatgttcagaaccgagatctcat---------------- 422

                                                                       
Query: 245 tttgatgaatataaagtgtccttcaacatctttaaaattttgaaatttgaaactggttga 304
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ------gaatataaagtgtccttcaacatctttaaaattttgaaatttgaaactggttga 476

                          
Query: 305 attaatttttagtga 319
           |||||||||||||||
Sbjct: 477 attaatttttagtga 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)