BAC Information

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BAC

Clone NameMSMg01-076B08
Chromosome10 (Build37)
Map Location 23,586,660 - 23,586,986
singlet/doubletsinglet
Overlap geneVnn3
Upstream geneEya4, Rps12, 1110021L09Rik
Downstream geneVnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537, Ctgf, Enpp1, Enpp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076B08.T7 (MSMg01no076_b08.b1)MSMg01-076B08.TJ (MSMg01no076_b08.g1)
ACCAG298744AG298745
length703720
length of high quality
(start - end)
331 (49 - 379)251 (75 - 325)
definitionCHROMAT_FILE: MSMg01no076_b08.b1 PHD_FILE: MSMg01no076_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:56 2005CHROMAT_FILE: MSMg01no076_b08.g1 PHD_FILE: MSMg01no076_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCAAACTTTCTAAAAGCTGACCCCACGGGTTCCCCACAAGT
TCTCGAGTTGGTGGTTTGACACTTCAGCAATGTACATATCTATGTAAAAG
GAGAGGGCAAAAAGTAGTCATAGTTCAGTTTCAAAGGACAGTTTCCATTT
AAGTAGTCGCAACTTGTTAAATACTAAGTCAGATTTAATGGGGCAAGATT
ATTACACTTTTTTGTTGTTTGTTTATTTTTGAGACAGGGTTTCTCTGTCA
TGGAAACTCACTCTGTAGACCTGGTTGGCCTCAGTCTCAGAGACCTACCT
GCCTTTGCCTCCTAAGCATTGAGATTAAAGGCACGCGCCACCGACACCTG
GCAATTATTACACTTTTAATGAAGGAAAAGTCCATAGAATTTTAAAGGCC
TGCCTTCTGTATACTTCTGACTCACATTGCTCCGCACGGCGTCTGCTTTA
GCTACATTTCTTTAAACTCACTCCTGCATCCCTGTGCTATACTGGGCCCC
AATCTATCTTAGTCCCCAGCACACAATTCCTTCTAAAAGGTCCCCTACCG
CCCCTTACCCGACGCTTTGCATCTGTTCCGCCTTTAATTGTCTCCTGCCG
TTCGAGAACCCTGCCATTCTGCTTTATGCCTTTTCTCTTGTTCCCCCTAC
CAC
NTTCGATGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTGTTTAGCTCTGAGCCCCATTTTT
AATGTGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATA
TATTTGATATTAGTCCCCCATCTGATTTAGGATAGGTAAAGATTCTTTCC
CAATCTGTTGGTGGCCTTTTTGTCTTATTTACGGTGTCTTTTGCAATTTT
ATGAGGTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTGT
TTATTCAGGAATTTTTCCCCTGTGCCTATATCTTTTGAGGCTCTTCCCCC
ACTTTCTCCTCTATAACTTTCAGTGTCTCTGGCCTTATGTGGAGTTTCTT
GATCCATTTAGATTTCACCCCCACCACTTGGATATAGGCCATTACAGGTC
TCCCCTTGTCATTACTTCAGACAGTACTTCCTCGATCTCTTCGCTTTTTG
CCCTCTTATCGGTGTCATTACTTTTTTCTTCCCCCCTGCCTTTTCCCGTT
TCTCGTGTTTCCACGCCGTTCCCGTCTTTACAAGACGGCTTTCCTCCCTT
CCTCATTTGCCTTTACCTTCCCCTTTTCTTCTTTTTTCTTTTCCCCCCTC
CTTCTTTTTTTTCCCTTTTCCTGTCCTTTCTTTCCTCTTTGCTTCCTTTT
CTCTCCTTTCCTCCTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_b08.b1 MSMg01no076_b08.b1 CHROMAT_FILE:
MSMg01no076_b08.b1 PHD_FILE: MSMg01no076_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:56 2005
         (331 letters)



>mm_chr10_23586568_23587298
          Length = 731

 Score =  625 bits (323), Expect = 0.0
 Identities = 326/327 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcaaactttctaaaagctgaccccacgggttccccacaagttctcgagttggt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gaattcttcaaactttgtaaaagctgaccccacgggttccccacaagttctcgagttggt 360

                                                                       
Query: 65  ggtttgacacttcagcaatgtacatatctatgtaaaaggagagggcaaaaagtagtcata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggtttgacacttcagcaatgtacatatctatgtaaaaggagagggcaaaaagtagtcata 300

                                                                       
Query: 125 gttcagtttcaaaggacagtttccatttaagtagtcgcaacttgttaaatactaagtcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gttcagtttcaaaggacagtttccatttaagtagtcgcaacttgttaaatactaagtcag 240

                                                                       
Query: 185 atttaatggggcaagattattacacttttttgttgtttgtttatttttgagacagggttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 atttaatggggcaagattattacacttttttgttgtttgtttatttttgagacagggttt 180

                                                                       
Query: 245 ctctgtcatggaaactcactctgtagacctggttggcctcagtctcagagacctacctgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ctctgtcatggaaactcactctgtagacctggttggcctcagtctcagagacctacctgc 120

                                      
Query: 305 ctttgcctcctaagcattgagattaaa 331
           |||||||||||||||||||||||||||
Sbjct: 119 ctttgcctcctaagcattgagattaaa 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)