BAC Information

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BAC

Clone NameMSMg01-076B19
Chromosome10 (Build37)
Map Location 82,289,312 - 82,289,656
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik
Downstream geneTxnrd1, Eid3, EG216185, Chst11, Slc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076B19.T7 (MSMg01no076_b19.b1)MSMg01-076B19.TJ (MSMg01no076_b19.g1)
ACCAG298766AG298767
length716778
length of high quality
(start - end)
592 (39 - 630)348 (130 - 477)
definitionCHROMAT_FILE: MSMg01no076_b19.b1 PHD_FILE: MSMg01no076_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:58 2005CHROMAT_FILE: MSMg01no076_b19.g1 PHD_FILE: MSMg01no076_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
GAAGCTATTCCACATAAAGAGACACCTCATACTCATGATTGGCAGGTTCA
TCGTCGTAAAAATGTTGACTCTTTGTTAAGCTGCCAGCAAGAAGTGTTTG
GCGGTGAATAAGACTATTCTAAACTTTATATGGAAAGGAACGGAAGCCAG
AATAACTCAGACAACTTTGAAAAGAACAAAGCCAGAGAACTCTGTTTCCC
TATTTCAAGAGTCATTACAAAGCCCAAGTGGTCGAATGTGTGAGAGGCTG
GCAAAGCAAGAGACTTAGAGATCAATGGGATGGGAGCTTGAACCCAAAAG
GGGACCCACGAATACACTCAGCAGGGTGTTTGTTTGCTTGAGTCAGGGTC
TCATATGCAGCCCTGGCTGGCCTGGAACTCACTGTGTAGACAAGGCAGAC
CTCCAAATCACAGAGATCTACCCCCCACCCACCCTACACTGGGATTAAAG
GCCTATGCTACCATGCTTGCAGCTAAGTTCTGAGAGGCACAAAAGCAATT
CAATGGAGGAAAGAAGACCTTTCTGCTCTGGCACAGCTGGATATCTTTGT
CTCCGTCTCTTGCTCTCCCCATCTCTCTTTCTCTCTCCTCTCAGAGACTG
ATCTGCTCTATTGGCCATATTCAGCCTGGAATCTTCCAGATGCCTCTGAC
TATACTCTCCTTCATA
TTTTTTNNNCNNNNNNNNNNTTTTTCTCTCCCTTCTTNTTCCCCCTCCTC
TCCNTTCCGATGCTATGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCATATATCAATCTGCGA
GAATGGCTTGGCATTTAAGAGTACATAGAAGAGGCTGTTTTACACCTTGC
TGAGTGTAAGCTCAAGGATGCAGGCAGCCATTCAGAGCCTGTTGTGCCTG
GGGAAGTCACATGGCTAGCGTGTGTACTCCGCTGCAGGACCATCTGTGTA
GAGTCCCGCATAATTGTTAAGTCTGCCACGTGAGATTGCCTGCCTCATTT
AACAGTGTGTTAAAACAGATCCCCACCTTTTTCTGAATCTTGAACTGCAT
ACAGCTCTGACAATTACCGTGGCTCGAGAGACTACGGTAATTAGCTGCCT
CCCTAAAGCCAGGCATGTGTCCTACATTTCCAGCTTTTGCTTTGTTTTGT
TTTTGTTTTTGTTTTACAAGACCTGTAATGATGCTGTAACCATATTGTCC
ACATAATGAACTAAATAACGAATAGGCCGAGGGCTGGACTGGTGACAGGT
TGAAGGGAGCTGTGCAGCTGCGATAGAAGCTCGTTGTTACTTAGCCTTGG
GAGGGAGAGATACGCTTTGCACCACTATAACCCACTCCCTATGTCCCGAA
AGACAATGGGCATGTGCACCGGCGAGTTTATGGCCTTGCGCGACGCTTCT
TGGTGCCAACGGAATTAACCCCGGCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_b19.g1 MSMg01no076_b19.g1 CHROMAT_FILE:
MSMg01no076_b19.g1 PHD_FILE: MSMg01no076_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:58 2005
         (348 letters)



>mm_chr10_82289112_82289859
          Length = 748

 Score =  605 bits (313), Expect = e-177
 Identities = 337/345 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcatatatcaatctgcgagaatggcttggcatttaagagtacatagaagaggctgtt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcatatatcaatctgagagaatggcttggcatttaagagtacatagaagaggctgtt 260

                                                                       
Query: 61  ttacaccttgctgagtgtaagctcaaggatgcaggcagccattcagagcctgttgtgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacaccttgctgagtgtaagctcaaggatgcaggcagccattcagagcctgttgtgcct 320

                                                                       
Query: 121 ggggaagtcacatggctagcgtgtgtactccgctgcaggaccatctgtgtagagtcccgc 180
           ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct: 321 ggggaagtcacatggctagtgtgtgtactcctctgcaggaccatctgtgtagagtcccac 380

                                                                       
Query: 181 ataattgttaagtctgccacgtgagattgcctgcctcatttaacagtgtgttaaaacaga 240
           | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaattgttaagtctgccacgtgggattgcctgcctcatttaacagtgtgttaaaacaga 440

                                                                       
Query: 241 tccccacctttttctgaatcttgaactgcatacagctctgacaattaccgtggctcgaga 300
           |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 441 tccccacctttttctgaatcttgaactgtatacagctctgagaattaccgtggctcgaga 500

                                                        
Query: 301 gactacggtaattagctgcctccctaaagccaggcatgtgtccta 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactacggtaattagctgcctccctaaagccaggcatgtgtccta 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)