BAC Information

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BAC

Clone NameMSMg01-076E03
Chromosome10 (Build37)
Map Location 37,063,835 - 37,063,940
singlet/doubletsinglet
Overlap genenone
Upstream geneHs3st5, Hdac2, Marcks, LOC100040846
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076E03.T7 (MSMg01no076_e03.b1)MSMg01-076E03.TJ (MSMg01no076_e03.g1)
ACCAG298878AG298879
length808837
length of high quality
(start - end)
110 (111 - 220)221 (129 - 349)
definitionCHROMAT_FILE: MSMg01no076_e03.b1 PHD_FILE: MSMg01no076_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:10 2005CHROMAT_FILE: MSMg01no076_e03.g1 PHD_FILE: MSMg01no076_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTGAATTTATTTTTTTTATCTACACCACCACCCCCCCACCACAACCACA
CAACCTCTTCCCAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCAGTGTTCAACCCGAGCTTATAGGTTAATGA
TAATGTTTTCCTCAGCTTTACCTATTTCACCAGAGTACTAAGGGGATGTA
GTACTCATATGCATTGTTGGTGAAGAAGGAGGATGTGAGCATCAAAATGT
ACTACATAGTTTAAGGACAGATACTAATTCTGAAATTATTTAGATTACTT
TCCTATCTTATTAGTTTGAAGCCATAGAGAACATGTTAGTGGTATTTACT
ATTGTCCAAATATTTCCTGCGGAACGATAGGATGACCGATCGTGCCATAA
TCTTAAAATTAAGTCTAATGTCTGTACGACTATTTCTTATCCAGTGTAAC
AAAAATTTTATTTCTTTACATCTATATTTTATAGAAAGTGCTATACTTTC
TCCCCTCACATTACACATGTTCCACATATCCTGCTACATCACGCTAAATT
TTTACCTCTATATTTTTTTATTTTCTTTTATACTTTGTATCTCTCTATAA
TCATAACTTTTCTCTCCATAATCATAATACACCCTAAAATGCTGCTTATT
GATCTTACTTTTCCGCTTTTTTTTTTAATATTAATCTCACTTCCCTTACC
TCTTATCATCTATTCCTCATTTGGTTTCTAACCCCCCCCCCTACCTTCAC
TCGATACCCTTTTCTTCATCCTCTCTAGTGTTTGTCTTCCATCCTATTTG
GCCACCCT
TTTCTTTTTTTTTTTCCTCTTTTTTNNTTTTCTTCTTTTTCTTCTCTTTC
TTTTTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAACCAAATGGC
TGAGAAGCACCTGAAAAATGTTCAACATCCTTAATCATCATAGAAATGCA
AATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGATAGCAGATGCTGGTTAGGATGTGGAGAAAGAGGA
ACACTCCCCCATTGTTGGTGGCATTGCAAGCTTGCACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCACAAAATTGTACTTAGTCTTACCGGAGTATC
CCGCAATACCTCTCCTTGGTATATATCCACAAAATGCCCCTATCAGTTAT
TAAAGATAAAATGCTCCAATATGATTAATTATTTCCTTTATTTACTATTT
TTCCGAAGCTTGTAATAGCATTTTATATGTTCCCTCTATCATATCCCATG
AGTCACCTCTATTTCTGTTCACCATTTTACATAATGGGTATTTCTCACTC
CACCTTATTAAATCGTAACCTACTTTTCATCCACCACCCCTATCTCACTC
GGAATGCACCTCTGGCACCACCTATTCTTCCTGCGTCCCCCTTTATAACC
CCCCCCTCCCCTTATACTCACCCTGTATAACCTATTTCCCTTCCATATAT
AGTGATCTCTACTCCCATAAACACTTACCCTCCCCCCCCAAAACCTCACA
TATTCTTATTTGCGCTTACATTGTGACTCTTCGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_e03.b1 MSMg01no076_e03.b1 CHROMAT_FILE:
MSMg01no076_e03.b1 PHD_FILE: MSMg01no076_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:10 2005
         (110 letters)



>mm_chr10_37063631_37064140
          Length = 510

 Score =  182 bits (94), Expect = 6e-51
 Identities = 103/106 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgttcaacccgagcttataggttaatgataatgttttcctcagctttaccta 64
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gaattcagtgttcaaaaggagcttataggttaatgataatgttttcctcagctttaccta 251

                                                         
Query: 65  tttcaccagagtactaaggggatgtagtactcatatgcattgttgg 110
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaccagagtactaaggggatgtagtactcatatgcattgttgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 510
Length adjustment: 8
Effective length of query: 102
Effective length of database: 502
Effective search space:    51204
Effective search space used:    51204
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)