BAC Information

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BAC

Clone NameMSMg01-076F02
Chromosome10 (Build37)
Map Location 6,627,451 - 6,628,006
singlet/doubletsinglet
Overlap genenone
Upstream geneEsr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1
Downstream geneIyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076F02.T7 (MSMg01no076_f02.b1)MSMg01-076F02.TJ (MSMg01no076_f02.g1)
ACCAG298924AG298925
length699705
length of high quality
(start - end)
558 (46 - 603)418 (79 - 496)
definitionCHROMAT_FILE: MSMg01no076_f02.b1 PHD_FILE: MSMg01no076_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:15 2005CHROMAT_FILE: MSMg01no076_f02.g1 PHD_FILE: MSMg01no076_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGAATTACACATAGCACGATACTAATAATAGTTGACTCAATGGA
GAAGGGGGGGATGAGTGGGGAAACACACCTGCAACATAAATATATCATCA
AGGGGGCTTCAGCCTTCTTTATATCATGTTCACATTTTACGTAGAGAAGA
GTTTGTAATCTCTGACTTATTTCAAGACACTGCTCTATAGGCCCACCAGT
TATTCTCACCCCCAACAAGGAGTACAGCTGAATAATTCAGATTTTGTACG
ACACATGTATGCATATATGTGTCCTGAACAGAGTTTTATATCAGTAACAA
GAGAAAGCAGCCTGCTGAAGCTGGTTATAATTAGAAGCATTATGCTCTGT
GTGGAGGCCTTCCACAAATAGGTAACAATACAGTCCCTTCCTCCTCTATG
GAGAATGCTGCCCCTAAGTCCGAGTTCTGGCTCTCGATTGAAAGCCATTG
TTTCAGGCTCCAGTCTGTCTAGCTTCAGTCCAGATAGGAGGCTAGGAAAG
TCCCTCCATCCACTTCGAAGGAGGAGCTGATTCTCAGAACCACAGGAAGA
GGAGTCGGGGAGAGAAACGGAAGGAAGCTGGCAACCCCTCCTCCCTGCTC
TCAGGCCTTCCTGCTTCCCAAACCCATTCAGCGTAGTCCGAGGTGACCA
NNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATAAAACCAGAGACACTGA
AATTTATAGAGGAGAAAGTATGAAAAACCCACAAAGTTATGGGCACAGGG
GAAAAATTTCTAAACAGAAAAGCAATGGCCTGTACTGTAAGATCAAGAAT
CAACAAATGGGACCTCATAAAATTACAAAGCTTCTATAGGGAAAAAGATA
CTGTCAATAAGACAAAAAGGCCACCAATATATTGGGAAATAATTTTTACC
AATCCTAAATCTGATAGGGGACTAATATCCAATATATACAAAGAGCTCAA
GAAGCTGAACTCTAAAAATTCAAATAACCCCATTAAAAAATGGGATACAG
AACTAAACAAAGAATTCTCACCTGAGGAATACCAAAGGGCTGAAAAGCAC
CTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACACGTGAGAGTCCACCTCATGCCAGTCATAATGGCTAGGATCAAAAA
TTCAGGTGATAGCAGATGCTGGCCAGAATATGGAGAAAGAGAAACATTCC
TCCATTGCTGGCGGAATTGAAAGTTTGTACAACCACTCTGGACTTCATTC
TGGCAGTTCTCCGGAATATGGACACAGTACTACTGGTAAATCCCACAATA
CCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_f02.b1 MSMg01no076_f02.b1 CHROMAT_FILE:
MSMg01no076_f02.b1 PHD_FILE: MSMg01no076_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:15 2005
         (558 letters)



>mm_chr10_6627247_6628206
          Length = 960

 Score = 1040 bits (538), Expect = 0.0
 Identities = 551/556 (99%), Gaps = 2/556 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggaattacacatagcacgatactaataatagttgactcaatggagaaggg--g 62
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 205 gaattctggaattacatatagcacgatactaataatagttgactcaatggagaagggagg 264

                                                                       
Query: 63  gggatgagtggggaaacacacctgcaacataaatatatcatcaagggggcttcagccttc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggatgagtggggaaacacacctgcaacataaatatatcatcaagggggcttcagccttc 324

                                                                       
Query: 123 tttatatcatgttcacattttacgtagagaagagtttgtaatctctgacttatttcaaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttatatcatgttcacattttacgtagagaagagtttgtaatctctgacttatttcaaga 384

                                                                       
Query: 183 cactgctctataggcccaccagttattctcacccccaacaaggagtacagctgaataatt 242
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cactgctctataggccctccagttattctcacccccaacaaggagtacagctgaataatt 444

                                                                       
Query: 243 cagattttgtacgacacatgtatgcatatatgtgtcctgaacagagttttatatcagtaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagattttgtacgacacatgtatgcatatatgtgtcctgaacagagttttatatcagtaa 504

                                                                       
Query: 303 caagagaaagcagcctgctgaagctggttataattagaagcattatgctctgtgtggagg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caagagaaagcagcctgctgaagctggttataattagaagcattatgctctgtgtggagg 564

                                                                       
Query: 363 ccttccacaaataggtaacaatacagtcccttcctcctctatggagaatgctgcccctaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccttccacaaataggtaacaatacagtcccttcctcctctatggagaatgctgcccctaa 624

                                                                       
Query: 423 gtccgagttctggctctcgattgaaagccattgtttcaggctccagtctgtctagcttca 482
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 625 gtccgagttctggctctcgattgaaagccattgttgcaggctccagtctgtctagcttca 684

                                                                       
Query: 483 gtccagataggaggctaggaaagtccctccatccacttcgaaggaggagctgattctcag 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtccagataggaggctaggaaagtccctccatccacttcgaaggaggagctgattctcag 744

                           
Query: 543 aaccacaggaagagga 558
           ||||||||||||||||
Sbjct: 745 aaccacaggaagagga 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 960
Length adjustment: 10
Effective length of query: 548
Effective length of database: 950
Effective search space:   520600
Effective search space used:   520600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)