Query= MSMg01no078_f15.b1 MSMg01no078_f15.b1 CHROMAT_FILE:
MSMg01no078_f15.b1 PHD_FILE: MSMg01no078_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:39 2005
(239 letters)
>mm_chr10_40980832_40981470
Length = 639
Score = 426 bits (220), Expect = e-124
Identities = 235/240 (97%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 1 cagggctctatttacaagaagttttcaattatactctgtaaggcaggaacaagatccact 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggctccatttacaagaagttttcaattatactctgtaaggcaggaacaagatccact 260
Query: 61 catctagaggtaggtatttgttccactaatagaccatcact-tcctgctttgctgttaat 119
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 261 catctagaggtaggtatttgttccactaatagaccatcactctc-tgctttgctgttaat 319
Query: 120 ttgcttctatactactaatctatacttattggagaagcactcatacttatcacagtttgt 179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 320 ttgcttctatactactaatctatacttactggagaagcactcatacttatcacagtttgt 379
Query: 180 acaatcccagggactgaaacctgggcctcacatgtgctcaccagtgctctaacactgaga 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 380 acaatcccagggactgaaacctgggcctcacacgtgctcaccagtgctctaacactgaga 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no078_f15.g1 MSMg01no078_f15.g1 CHROMAT_FILE:
MSMg01no078_f15.g1 PHD_FILE: MSMg01no078_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:39 2005
(505 letters)
>mm_chr10_41084053_41084962
Length = 910
Score = 870 bits (450), Expect = 0.0
Identities = 493/510 (96%), Gaps = 5/510 (0%)
Strand = Plus / Minus
Query: 1 cactgggtctgggcaaagcagtggtgtcaagtgtttcagaaatgctggagctttatgaga 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 710 cactgggtctgggcaaagcagtggtgtcaagtgtttcagaaccgctggagctttatgaga 651
Query: 61 aagatcccgaagaaattctgtgtaatcttggatttggacgagatgaaccggatattgctt 120
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 650 aagatcccgaagaaattctgtgtaatcttggatttggacgagatgaaccagatactgctt 591
Query: 121 ctaaaattccttccagattttaaaattcatcatcctttgccagaggcatagacattaaag 180
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 590 ctaaaattccttccagatttttaaattcatcaccctttgccagaggcatagacattaaag 531
Query: 181 tatttctgagtgcacagatgcaacagttggaagtagagaactcaaactatgctctaacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tatttctgagtgcacagatgcaacagttggaagtagagaactcaaactatgctctaacaa 471
Query: 241 gccaattttgccaaattgaagtcctcactactgtggccaatgcattttcttctctctatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gccaattttgccaaattgaagtcctcactactgtggccaatgcattttcttctctctatt 411
Query: 301 cccaagtctctggaactccactgcagagggttggaagggaaccaagtcctcagtgacctc 360
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 410 cccaagtctctggaactccactgcagagggttggaagggaagtaagtcctcggtgacctc 351
Query: 361 caccaaggaggtggcagac-----ccccccccccaacttgaagcaacactgcaaaccgtc 415
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 350 caccaaggaggtggcagacaccccccccccccccaactcgaagcaacactgcaaaccgtc 291
Query: 416 tgatgaaaacactattaaaactaaacttatgggttgataaaacagagaaaggagaaggga 475
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tgatgaaaacactatcaaaactaaacttatgggttgataaaacagagaaaggagaaggga 231
Query: 476 gccccgccccctgctgctgagaaaggaagg 505
|||| |||||||||||||||||||||||||
Sbjct: 230 gccctgccccctgctgctgagaaaggaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 910
Length adjustment: 10
Effective length of query: 495
Effective length of database: 900
Effective search space: 445500
Effective search space used: 445500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
