BAC Information

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BAC

Clone NameMSMg01-078H13
Chromosome10 (Build37)
Map Location 17,336,252 - 17,336,579
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078H13.T7 (MSMg01no078_h13.b1)MSMg01-078H13.TJ (MSMg01no078_h13.g1)
ACCAG299798AG299799
length682679
length of high quality
(start - end)
541 (76 - 616)331 (72 - 402)
definitionCHROMAT_FILE: MSMg01no078_h13.b1 PHD_FILE: MSMg01no078_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:48 2005CHROMAT_FILE: MSMg01no078_h13.g1 PHD_FILE: MSMg01no078_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGTTCCCCGCCAAGTATAATAAAAACAATATACAGCAAAC
CAATAGTTAACATCAAACTAAATGGAGAGAAACTTGAAACAATCCCATTA
AAATCAGGGACAAGACAAGGCTGTTCCCTTCTTATTCAATATAGTACTCA
AAGTTCTAGCCAGAGTAATTAGACAACAAAAGGAGATCAAAGGGATACAA
ATTGGGAAGGAGGAAGGAAAGATATCACTATCTGTAGATGATATGATAGT
ATATATAAGTGACCCTAATAATTCCACCAGAGAACTCCTAAGCCTGATAA
ACAGCTTCAATGAAGTAGCTGGATATAAAATTAACTCAAACAAGTAAATG
GCCTTTCTGTACACAAAGGACAAACAGGGCTGAGAAAGAAATTAGGGAAA
CAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGCATGACT
CTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCCTTGAA
GAAAGATATTGAAAAAGACCTCTGAAGATGGAAAGATCTCCCATGCTCGT
GGATTTGCAGGATTAATACAGTTAAAAAAAAAATCATCTTACCAAAAGCA
ATCTACTGATTCAAGGCACTCCCCATCATAAT
CCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTCATTTAAGGAAGCAAAAATGATTTGG
GGAAAGAATAAAGTGCCGTTTCACTCTTGCTGACCAGACAGCCAGTACAC
TCATGATCTCTGCTCTTTTGGAGAAGAAAATCCACTAAGATCCTAAATCT
GTGCTACAGCTTCTTGTCATTGATGGTTGCCACATGTGCTGGGCATGTCT
ATGTCAACATAAAACGCCGATGTAGCATTTTCCAGGGTCACCATCACACA
ACAGCACACCTGTTCTCCAACTTCTCTTTTTTGTTCTGGGGACATTGGGG
CAGGCCACAGCATGGCTCATTTAGTTGCCTCGATTTTCTTCTGTTTGGCA
TACATGGGACCCCGAGCTCACATGTGCTTACATGCAGCATCCATTTTGAG
AGTAGCATTTTATTGTAGACCCTTGATTAAATGAACTCTTGTGGTGGGGG
TGTGGTGGTCTCCAACCAGTGCTGCTCTATTACCTTTTTCCTCCCCCTTG
CTAAGTTTCTCCCTTACCTCCTATCTCATAATCTTTTCTCCCTTACCTTT
AATCTTATTTACCCATCTTACAGCTCAACGATCTCACATGATCGCCTCGT
TTCCTCTTCCATACCTTATCTCATTGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_h13.g1 MSMg01no078_h13.g1 CHROMAT_FILE:
MSMg01no078_h13.g1 PHD_FILE: MSMg01no078_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:48 2005
         (331 letters)



>mm_chr10_17336052_17336783
          Length = 732

 Score =  627 bits (324), Expect = 0.0
 Identities = 327/328 (99%), Gaps = 1/328 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcatttaaggaagcaaaaatgatttggggaaag-aataaagtgccgtttcactcttgc 59
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 528 cttcatttaaggaagcaaaaatgatttggggaaagaaataaagtgccgtttcactcttgc 469

                                                                       
Query: 60  tgaccagacagccagtacactcatgatctctgctcttttggagaagaaaatccactaaga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgaccagacagccagtacactcatgatctctgctcttttggagaagaaaatccactaaga 409

                                                                       
Query: 120 tcctaaatctgtgctacagcttcttgtcattgatggttgccacatgtgctgggcatgtct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tcctaaatctgtgctacagcttcttgtcattgatggttgccacatgtgctgggcatgtct 349

                                                                       
Query: 180 atgtcaacataaaacgccgatgtagcattttccagggtcaccatcacacaacagcacacc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 atgtcaacataaaacgccgatgtagcattttccagggtcaccatcacacaacagcacacc 289

                                                                       
Query: 240 tgttctccaacttctcttttttgttctggggacattggggcaggccacagcatggctcat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgttctccaacttctcttttttgttctggggacattggggcaggccacagcatggctcat 229

                                       
Query: 300 ttagttgcctcgattttcttctgtttgg 327
           ||||||||||||||||||||||||||||
Sbjct: 228 ttagttgcctcgattttcttctgtttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 732
Length adjustment: 9
Effective length of query: 322
Effective length of database: 723
Effective search space:   232806
Effective search space used:   232806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)