BAC Information

Click to search

BAC

Clone NameMSMg01-079G14
Chromosome10 (Build37)
Map Location 57,029,849 - 57,029,993
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629732, Gja1, EG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742
Downstream geneLOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079G14.T7 (MSMg01no079_g14.b1)MSMg01-079G14.TJ (MSMg01no079_g14.g1)
ACCAG300497AG300498
length690689
length of high quality
(start - end)
145 (254 - 398)---
definitionCHROMAT_FILE: MSMg01no079_g14.b1 PHD_FILE: MSMg01no079_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:02 2005CHROMAT_FILE: MSMg01no079_g14.g1 PHD_FILE: MSMg01no079_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGAGGACCGCGGAATTCC
CATCCCGATCTGATATAGTATAACAAAGTGCCGCGCTGAATATGACTTGA
GATATATGAGACCTCGAGCCTACCTCCGAGAGTGTCCAAAAGGCCACACC
TCCTAATAGCGACATTCCTGGTACGCCAAGGTTTAAAACACATGAATCTA
TGGGGGCTATTTCTATTCAGACCACTCAACCGTACTAATAATCTCACCTG
GGATTGGAAAAAAATTCTCCATCCTAAAGTATGCACTTTATATGTACACA
TGTGAAATATACAATTTAAAAATTGTTCATAACAACAAAATGTCTGGAAA
TGCAGACACATTGTAACAGTTAAGATGCATAGCTACATCATTTGGACACA
AGACAGGTGGTCATGATATTCCAAGTCCAAGTACATCTCGGTATTATTAT
AGTGCCAAAGTTCTCTAGGTAAATAACTGGTCATTACATGGGGGAAGGCG
GCAGCTGAGTTGCTGCTGGAAACAATCTTATTTCAATTTTCTCAGAGAAC
ATTCTTGCAGCTAATTTTTTTTCTTTCTAAAATTTGAGAATCTACCTTAA
AAACAAGTTAGTCATGAAAGCAATAGGGAAAATCAAATGACAACGTTTGT
CTTGATTAATATTTTGAAGAACTCATCTTAATTATTTAGT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCAGTTGTTGTGCTTGAATGCCTACCTT
GTATTCTCTGACATGAATTTTGAATATAATATTTTCTATTCAGTGCTTGA
TCTTCCCGGCACAAAGGAGGAAATTACTGACACTATTGCTCTGCGCTCCA
GAACCACATGAGTACTATGATTTTACTGTGCGATTTACTCTAATCTGTTC
TATCACCTTACAAATGCGACAGCATCTATAGCATGCTTCGATAATCTTCA
TATAAATTGAATCAAACAACAAATGCGATGTGTAGAAGGACATTAATATT
TTATACCTGCTGCATCTTTTACATTGCAGCAAATGCTACTGACTGGGTAG
ATCACAGATCCCTCCTTATAGACATAATTACCACTGTGTTTACTCTTGCA
TTTCTATGTGAGAGCATCTGCTCAGCAGATTCTCTCCTTTATTTATTCCA
ACATCCCATGACGAGCTATCTGCCTTAACACCCTTTTCCTATTTCCAGGA
TCCTAGCCTATGTTTCAAATTTCATTTCATTGAATGCACAGCTTTTCTAC
ACCATGTGCTTGCCCGTTCTTTGCTTATCCATAATTGTTAACCGCCCATC
CTTCATGTGCTGAGTTTATCGCCATTACTTCATGTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_g14.b1 MSMg01no079_g14.b1 CHROMAT_FILE:
MSMg01no079_g14.b1 PHD_FILE: MSMg01no079_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:02 2005
         (145 letters)



>mm_chr10_57029649_57030193
          Length = 545

 Score =  265 bits (137), Expect = 8e-76
 Identities = 143/145 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggaaaaaaattctccatcctaaagtatgcactttatatgtacacatgtgaaatataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttggaaaaaaattctccatcctaaagtatgcactttatatgtacacatgtgaaatataca 286

                                                                       
Query: 61  atttaaaaattgttcataacaacaaaatgtctggaaatgcagacacattgtaacagttaa 120
           ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 285 atttaaaaattgttcataacagcaaaatgtctggaaatgcaaacacattgtaacagttaa 226

                                    
Query: 121 gatgcatagctacatcatttggaca 145
           |||||||||||||||||||||||||
Sbjct: 225 gatgcatagctacatcatttggaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space:    73569
Effective search space used:    73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)