BAC Information

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BAC

Clone NameMSMg01-079I05
Chromosome10 (Build37)
Map Location 23,586,568 - 23,586,986
singlet/doubletsinglet
Overlap geneVnn3
Upstream geneEya4, Rps12, 1110021L09Rik
Downstream geneVnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537, Ctgf, Enpp1, Enpp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079I05.T7 (MSMg01no079_i05.b1)MSMg01-079I05.TJ (MSMg01no079_i05.g1)
ACCAG300575AG300576
length711702
length of high quality
(start - end)
543 (47 - 589)576 (71 - 646)
definitionCHROMAT_FILE: MSMg01no079_i05.b1 PHD_FILE: MSMg01no079_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:10 2005CHROMAT_FILE: MSMg01no079_i05.g1 PHD_FILE: MSMg01no079_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCAAACTTTGTAAAAGCTGACCCCACGGGTTCCCCACAAGTTC
TCGAGTTGGTGGTTTGACACTTCAGCAATGTACATATCTATGTAAAAGGA
GAGGGCAAAAAGTAGTCATAGTTCAGTTTCAAAGGACAGTTTCCATTTAA
GTAGTCGCAACTTGTTAAATACTAAGTCAGATTTAATGGGGCAAGATTAT
TACACTTTTTTGTTGTTTGTTTATTTTTGAGACAGGGTTTCTCTGTCATG
GAAACTCACTCTGTAGACCTGGTTGGCCTCAGTCTCAGAGACCTACCTGC
CTTTGCCTCCTAAGCATTGAGATTAAAGGCACGTGCCACCGACACCTGGC
AATTATTACACTTTTAATGAAGGAAAAGTCAACAGAATTTTAAAGGTCAG
CCTTCTGCATACTTCTGATTTAGATTGTTTTGTAAGGCGTTTGCTTTAGT
TAAATTTCTTTAAATTCACTCATGCATCCATGTGCTATACTGGGTCACAA
ATTAGTCTAGCCCCCAGCAGAGAAGCCCTCAAAACAGGTCTCCAAAGTCA
CGAGAGGATGCATTGAAGTTGCAGTGAGTTAACTTGAACTTGCCGGCAGA
GAACCTTGTCAATCTGCTTCATGCTTTTCACCTTGTAGCCAAGAAAAAGA
ATTGTTCTGGC
TCATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTGTTTAGCTCTGAGCCCCATTTTTAATG
GGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATT
TGATATTAGTCCCCCATCTGATTTAGGATAGGTAAAGATTCTTTCCCAAT
CTGTTGGTGGCCTTTTTGTCTTATTTACGGTGTCTTTTGCAATTTTATGA
GGTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTTAT
TCAGGAATTTTTCCCCTGTGCCCATATCTTTGAGGCTTTTCCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAGGGATCACAGGTCCCCCAAT
GGAGGAACTAGAGAAAGTACCCAAGGAACTAAAGGGATCTGCAACCCTAT
AGGTGGAACAACAATATGAACTAACCTGTACCCCCAGAGCTCGTGTCTCT
AGCTGCATATGTATCAGAAGATGGCCTAGTCGGCCATCAGTGGAAAGAGA
AGCCCATTGGTATGCAAACTTTATATGCCTCAGTACAGGGGAACACCAGG
GCCAAGAAGTGGTAGTGGGTGGATAGGGAAGTGGTGGGTCCCCCTCTCCT
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_i05.b1 MSMg01no079_i05.b1 CHROMAT_FILE:
MSMg01no079_i05.b1 PHD_FILE: MSMg01no079_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:10 2005
         (543 letters)



>mm_chr10_23586568_23587510
          Length = 943

 Score =  810 bits (419), Expect = 0.0
 Identities = 419/419 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcaaactttgtaaaagctgaccccacgggttccccacaagttctcgagttggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gaattcttcaaactttgtaaaagctgaccccacgggttccccacaagttctcgagttggt 360

                                                                       
Query: 65  ggtttgacacttcagcaatgtacatatctatgtaaaaggagagggcaaaaagtagtcata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggtttgacacttcagcaatgtacatatctatgtaaaaggagagggcaaaaagtagtcata 300

                                                                       
Query: 125 gttcagtttcaaaggacagtttccatttaagtagtcgcaacttgttaaatactaagtcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gttcagtttcaaaggacagtttccatttaagtagtcgcaacttgttaaatactaagtcag 240

                                                                       
Query: 185 atttaatggggcaagattattacacttttttgttgtttgtttatttttgagacagggttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 atttaatggggcaagattattacacttttttgttgtttgtttatttttgagacagggttt 180

                                                                       
Query: 245 ctctgtcatggaaactcactctgtagacctggttggcctcagtctcagagacctacctgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ctctgtcatggaaactcactctgtagacctggttggcctcagtctcagagacctacctgc 120

                                                                       
Query: 305 ctttgcctcctaagcattgagattaaaggcacgtgccaccgacacctggcaattattaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 ctttgcctcctaagcattgagattaaaggcacgtgccaccgacacctggcaattattaca 60

                                                                      
Query: 365 cttttaatgaaggaaaagtcaacagaattttaaaggtcagccttctgcatacttctgat 423
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  cttttaatgaaggaaaagtcaacagaattttaaaggtcagccttctgcatacttctgat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)