BAC Information

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BAC

Clone NameMSMg01-080B06
Chromosome10 (Build37)
Map Location 44,447,422 - 44,447,787
singlet/doubletsinglet
Overlap genenone
Upstream gene1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476
Downstream gene4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080B06.T7 (MSMg01no080_b06.b1)MSMg01-080B06.TJ (MSMg01no080_b06.g1)
ACCAG301006AG301007
length691694
length of high quality
(start - end)
423 (36 - 458)366 (73 - 438)
definitionCHROMAT_FILE: MSMg01no080_b06.b1 PHD_FILE: MSMg01no080_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:52 2005CHROMAT_FILE: MSMg01no080_b06.g1 PHD_FILE: MSMg01no080_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAATTTGCGGCGCTATACGACTCCTATATCCGAGAGGATCCGCGGAAT
TCAGCCTTCTGGAGTCGTGATATTGAGATAGAGGTATCTCATTTTGTTTT
TGTTGGGTGGGTTCTGTTCTTCACTTGCCGTTGCCCAGTCTGGATAGGAG
TCTCTGGAAGGTGTTTCTGTGAGTCAGAGGTAACACAAAATATGGAGATG
GGCTGTGAGGAAAGGCTGAGAGAGGCAGCAGAAAAGAAGTCTTGCGCGCG
CTCGACTGGCCAGGAAGAACGACGCTGCAACAGGATCCTTCTGCACACGT
TTATTGGGAGAGCTTGATTGTAGAGGCAAAAAGACCCCGAGCCCAGAACT
GGTGCTGCTTTTATAGGCCTAGGAGAGGCGTGTCTCACACCCGGATTGGT
TATGCACTACGCCTCATTTGCATGTTCCTCATCTGATTGGCTACTCTCTC
TCTCTGCACCTCACAGAGCCTCATTATCATACCTCATTTGCATGTCTCAC
ATCTGATTGGCTACTCTCTCTCTCTGTACCTCACAGAGCCTCATTATCAT
ACCTCATTTGCATGCCTCACATCCGACTGGACACACTCTCCCAGCCTCTT
TATCTTGCCCGGGCCTATTTTGTGTCTTCGCAAAATACCCCGCTGCATAT
GTTCTCCTCGCTTGTCCGTTCTCTTTACCCCCGCTGTTTTC
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCACTTCCTCTGAAGACCAAGGTGGCTG
GCACATGGTCAAGGCAGCACAGCCCATGATCCTTCTCTTCCGTTCCCAGG
CCTCCCTGTACTGACAGTTCCCAGTGCTGTCCTGAGGCATTTGCCTGAAT
GTTCCCAGTAGTGGTGATGACATTTTACTGGTCCATGTGTACTCTCATGA
GTTTTCTTATCCTCCTCCCCACACCCAAAAAGCAATTCCTCCTATAAGCT
TGTAGGAAGACAGGTGGGCCCTCAGTTAACTGATGGTATAGAAGCAGGAG
GCAACAGCTACTTCATACACTTAACTCCAAATTTAGTTTTGGCCTTCTTA
GCCAGTCTTATAGCACCCCAACTGAGTGGCCTTCAGCACAAAGAATGATA
AGGTACTTGCCCACTACACATCTTTGCTGATAGCAAGAACATGTTATCTC
TGGCTTATGCCTATTGTGCCAGGTACTGTTGGCTGCATGATCAATAGCAG
CCCCTCTCTCTTGTTCATGATCTTCTAGGCCACAATCTTGGCGCTAACCG
CTCTTGCTCAGTTATTTTATGTGGTTGCCGAAAGACGTTTACCTACAGAC
GCCCTCATGTTCCCCAAAAGACATCCTGTTTTGTTTTTTCCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_b06.g1 MSMg01no080_b06.g1 CHROMAT_FILE:
MSMg01no080_b06.g1 PHD_FILE: MSMg01no080_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:52 2005
         (366 letters)



>mm_chr10_44447222_44447987
          Length = 766

 Score =  685 bits (354), Expect = 0.0
 Identities = 363/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacttcctctgaagaccaaggtggctggcacatggtcaaggcagcacagcccatgatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ccacttcctctgaagaccaaggtggctggcacatggtcaaggcagcacagcccatgatcc 507

                                                                       
Query: 61  ttctcttccgttcccaggcctccctgtactgacagttcccagtgctgtcctgaggcattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttctcttccgttcccaggcctccctgtactgacagttcccagtgctgtcctgaggcattt 447

                                                                       
Query: 121 gcctgaatgttcccagtagtggtgatgacattttactggtccatgtgtactctcatgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcctgaatgttcccagtagtggtgatgacattttactggtccatgtgtactctcatgagt 387

                                                                       
Query: 181 tttcttatcctcctccccacacccaaaaagcaattcctcctataagcttgtaggaagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttcttatcctcctccccacacccaaaaagcaattcctcctataagcttgtaggaagaca 327

                                                                       
Query: 241 ggtgggccctcagttaactgatggtatagaagcaggaggcaacagctacttcatacactt 300
           |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 326 ggtgggccctcagttaactgatggcatagaagcaggaggtaacagctacttcatacactt 267

                                                                       
Query: 301 aactccaaatttagttttggccttcttagccagtcttatagcaccccaactgagtggcct 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aactccaaatttagtcttggccttcttagccagtcttatagcaccccaactgagtggcct 207

                 
Query: 361 tcagca 366
           ||||||
Sbjct: 206 tcagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)