BAC Information

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BAC

Clone NameMSMg01-080K18
Chromosome10 (Build37)
Map Location 50,582,892 - 50,583,449
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629652, Ascc3
Downstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080K18.T7 (MSMg01no080_k18.b1)MSMg01-080K18.TJ (MSMg01no080_k18.g1)
ACCAG301453AG301454
length713711
length of high quality
(start - end)
406 (37 - 442)558 (66 - 623)
definitionCHROMAT_FILE: MSMg01no080_k18.b1 PHD_FILE: MSMg01no080_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:39 2005CHROMAT_FILE: MSMg01no080_k18.g1 PHD_FILE: MSMg01no080_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:39 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGG
CCCATACCCAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACA
TCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACT
AGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGT
ATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTG
GAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATAT
ATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACAG
CTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCT
TTCTCTACACAACCAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACA
CCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTAAC
TAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAG
AAATTACAGAATATCTCACAAGATGGTAAGATCTCCCATGCTCATGGATT
GGGAGGCTCAATATTGCCAAAATGGTTATCTTGCCAAAAGCAATCTCACC
GATTCTATGTAATCCCCCATCAAATTCCCCCTCAATTCTTTTATGAATTA
TCACGACCCATTT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATCATATACATGTATGAAACTTAAAGAACAAAAAC
TAAAAAATAATGACAAAGAACAACAAAAATAAGGTCAAGGCTTTAGAGTA
TGTATCAGCTACCCACACAAGCAAAAATAAACACTCCAACATCCATTTTT
TCTAGATTGGAAACACACTTCAATGACCTAAAATATAGGGACTCAAAAGC
ATCATCTGCAGTCTTATTTAAATGACTATCTTCTACTGAAGCAGACACCA
ATACTTATTTCCTGGCATGGCCCATAACTCTACACTAGGTCATATCAGGT
AATCAGAGGATAAGTATGACCAGTATTCCAGACACATGCTTAAAAGTTAC
CAGTGACTTGCTGGGCAGTAATTCCATCACTTGGGAAGAAGAGGCAGGTT
AATCTCTATGAGTTCAAGGCCAGCCTGGTCTACTGAGTCAGTTCCAGGAC
TACCAGGGTTACACAGAGAAACCTTGTCTCAAAAAGCAAAAGCAAGCAAA
CAGATGGGTACCAGTGACTCAGTGGTCTCCTTAAAGCATCCAAATAGCAA
ATAAAGTGATATTCGAGCAAAAGAGCAAACTGAGGAAGCAGAGTTCCTGT
TCCCCCTGTTGNCACCTCTGCACTTGGACTTCACTTTTGGAGCTCACAGG
AAATAGAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_k18.g1 MSMg01no080_k18.g1 CHROMAT_FILE:
MSMg01no080_k18.g1 PHD_FILE: MSMg01no080_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:39 2005
         (558 letters)



>mm_chr10_50582692_50583649
          Length = 958

 Score = 1011 bits (523), Expect = 0.0
 Identities = 550/559 (98%), Gaps = 2/559 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcatatacatgtatgaaacttaaagaacaaaaactaaaaaataatgacaaagaacaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcatatacatgtatgaaacttaaagaacaaaaactaaaaaataatgacaaagaacaaca 260

                                                                       
Query: 61  aaaataaggtcaaggctttagagtatgtatcagctacccacacaagcaaaaataaacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaataaggtcaaggctttagagtatgtatcagctacccacacaagcaaaaataaacact 320

                                                                       
Query: 121 ccaacatccattttttctagattggaaacacacttcaatgacctaaaatata-gggactc 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || 
Sbjct: 321 ccaacatccattttttctagattggaaacacacttcaatgacctaaaatataaggg-ctg 379

                                                                       
Query: 180 aaaagcatcatctgcagtcttatttaaatgactatcttctactgaagcagacaccaatac 239
           |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||
Sbjct: 380 aaaagcatcatctgcagtcttatttaaaagactatcttctactgaagcagatgccaatac 439

                                                                       
Query: 240 ttatttcctggcatggcccataactctacactaggtcatatcaggtaatcagaggataag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttatttcctggcatggcccataactctacactaggtcatatcaggtaatcagaggataag 499

                                                                       
Query: 300 tatgaccagtattccagacacatgcttaaaagttaccagtgacttgctgggcagtaattc 359
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tatgaccagcattccagacacatgcttaaaagttaccagtgacttgctgggcagtaattc 559

                                                                       
Query: 360 catcacttgggaagaagaggcaggttaatctctatgagttcaaggccagcctggtctact 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 catcacttgggaagaagaggcaggttaatctctatgagttcaaggccagcctggtctact 619

                                                                       
Query: 420 gagtcagttccaggactaccagggttacacagagaaaccttgtctcaaaaagcaaaagca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gagtcagttccaggactaccagggttacacagagaaaccttgtctcaaaaagcaaaagca 679

                                                                       
Query: 480 agcaaacagatgggtaccagtgactcagtggtctccttaaagcatccaaatagcaaataa 539
           |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 680 agcaaacagatgggtaccagggactcagcggtctccttaaagcatccaaatagcaaataa 739

                              
Query: 540 agtgatattcgagcaaaag 558
           |||||||||||||||||||
Sbjct: 740 agtgatattcgagcaaaag 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)