BAC Information

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BAC

Clone NameMSMg01-084G23
Chromosome10 (Build37)
Map Location 6,460,530 - 6,460,828
singlet/doubletsinglet
Overlap genePlekhg1
Upstream geneEsr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l
Downstream geneIyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084G23.T7 (MSMg01no084_g23.b1)MSMg01-084G23.TJ (MSMg01no084_g23.g1)
ACCAG304292AG304293
length726731
length of high quality
(start - end)
305 (43 - 347)97 (145 - 241)
definitionCHROMAT_FILE: MSMg01no084_g23.b1 PHD_FILE: MSMg01no084_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:28 2005CHROMAT_FILE: MSMg01no084_g23.g1 PHD_FILE: MSMg01no084_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAAXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGAATCCGCGGA
ATTCACCCAGATCATAAGAAAGACCTGAAGACAATGCAAGTGACCAAGCA
GTCCCTCTCCACAACACAGACAAGAACAGCGTTGTCTATCTTGTCACCTA
TCTATGTGACCTCAGCATTAACTGCTCCACTGTGCCTTCAATTCCTCCCT
TCTGCACAACGCTTGCTTTGCCCCTTAAAGCCAATGATACCACTCAACTC
CACCTCTTGAATAGAACTGCTAAACAATCCTTTTTAAAGGTTAAAATACA
AAATAAAAACAACCATGTTGCTTTTGTATGCACTCCAAGTAACTGCAGAC
AGGTTAAGGTGAAAAAACAGCTGATTTGGGCTCACAGTTTCTGTAGGTAT
CAGTCTAGCATGGTGGCAGAATGTGTGGCACAGCAAAGCCACTTAAAACC
AAGTGTATTAGAACAAACTAAAAGCAAACATTCTCATAAGCACCAGTTAG
GTTGAGGCCTCATGAATACTCATGAATGAAACTTCCTGTATACAAGCTGT
TTTTCTTGCTTAGTTCTCTGTGCTTCTGGCATTATCAAATAAACCATATC
GTGTAGGCATCGAAAAAAAAATTTGCTTGCCCCTGCCTATCTGTACAGAA
CCAATCCATACTGTTATACAGAGCAACCCTCATGCTATCCCTCATTTCCA
TCCCAACACGACTTAAAAAACATCCA
GATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTGCAGTCTACCCTGACCTCAATT
TTCTAATCCTCCTGTCTTTGTCTCTCTGTGATCACAGGTGCCCATACCCC
CATACTCAGGAATAAGACAACACACTACAGCACACTTGCGTGCTCATGAG
AGTCAGAGAGAGAAAGAGTTCAGGCTATGGGGACAGGGCCAGGGGAGGTT
GGAGGGTGGCATAGAAGGGTTAGGGAGGGGCAGGTCTGTCTCTTTCTTGT
TTCTGTTCCTTGTTCTTTTGGTTCCTTCGTCATCTGTTGTATAGGTGCCC
TGTTATGCCTTGTATTTACCTGAACTCATACCAGCTTAGGATTCATAGTC
CTTGCCTTCATTTGCCCTATGCCAGTGGTTTTCATACTGTGTGTCCCGAC
CTCTTAAGGCTGCGGAACAACTCTTTTTATGGGAACCATCGCACCACCCA
AGGAAACACATGATACACTATTTTGCACGATGTGTGTCTCTCTCGTGTGT
TGATATGAGTTGTATTGTTTTACATATATTTTATTATCTCTATGACTTTG
TTCTTTTTGTTTTTATTTTTATTTTCCCACCTTCCTTTGTTTACTTTTCT
CTTTTACATTTTACTACTGTTCAACACAAATTTTACAATTTTTTTTTCTT
TATTTTTATAATATTCAAAATTATTCTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_g23.b1 MSMg01no084_g23.b1 CHROMAT_FILE:
MSMg01no084_g23.b1 PHD_FILE: MSMg01no084_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:28 2005
         (305 letters)



>mm_chr10_6460324_6461028
          Length = 705

 Score =  565 bits (292), Expect = e-165
 Identities = 298/300 (99%), Gaps = 2/300 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcacccagatcataagaaagacctgaagacaatgcaag-tgaccaagcagtccctc 65
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 505 gaattcacccagatcataagaaagacctgaagacaatgc-agatgaccaagcagtccctc 447

                                                                       
Query: 66  tccacaacacagacaagaacagcgttgtctatcttgtcacctatctatgtgacctcagca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tccacaacacagacaagaacagcgttgtctatcttgtcacctatctatgtgacctcagca 387

                                                                       
Query: 126 ttaactgctccactgtgccttcaattcctcccttctgcacaacgcttgctttgcccctta 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttaactgctccactgtgccttcaattcctcccttctgcacaacgcttgctttgcccctta 327

                                                                       
Query: 186 aagccaatgataccactcaactccacctcttgaatagaactgctaaacaatcctttttaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aagccaatgataccactcaactccacctcttgaatagaactgctaaacaatcctttttaa 267

                                                                       
Query: 246 aggttaaaatacaaaataaaaacaaccatgttgcttttgtatgcactccaagtaactgca 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aggttaaaatacaaaataaaaacaaccatgttgcttttgtatgcactccaagtaactgca 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)