BAC Information

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BAC

Clone NameMSMg01-086J21
Chromosome10 (Build37)
Map Location 90,881,209 - 90,881,400
singlet/doubletsinglet
Overlap genenone
Upstream geneAnks1b, Apaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
Downstream geneLOC100041799, LOC667203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086J21.T7 (MSMg01no086_j21.b1)MSMg01-086J21.TJ (MSMg01no086_j21.g1)
ACCAG305878AG305879
length6811,529
length of high quality
(start - end)
192 (98 - 289)---
definitionCHROMAT_FILE: MSMg01no086_j21.b1 PHD_FILE: MSMg01no086_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:26 2005CHROMAT_FILE: MSMg01no086_j21.g1 PHD_FILE: MSMg01no086_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCGTACCTGGGCGGAANTCTTACATTATTACTAAAAATACTTTCTTA
ACTATTTTGTTTTTAATTTCTTCAAGACTAACTTCTATTCTTCCTATTCA
ACTTTTAAAGTTTCTGATGTCATTTTGAAAAGAAAACATCTTTTTTTTAC
TGCATGGGCTTCTTTATTCTAAATAGCAATGCGTCCTTGCTCCTTGAATT
CACTGTCTTATGTTTCTCTAAGGATATTTGAGTTTGCTTTTTCTTTCTTT
TTTTCATATTCATTTACTCTATCTCCTCAACCTTCCCCCTACTCACCTTG
GGTTCAACTCCCTTAGGCATGTTACAGATTTGTTTTTTACCTCGCCCCCC
ACATGTTACAGACATGTTATAGCCATATTACAGGCATGTTACAGATATAT
AACAAACATGATACAGACATGTTATAGACATGTTACAGACATGTTACAGA
TGTTACAGACATATTACAGACATGTTACAGGCATGTTGCAGGCACGTTAC
AGGCATGTTACAGATATATTATAGACATGTTATAGACATGTTACAGACAT
ATTACAGGCATGTTATACACTTTCTACCAATATATTGTCTTTTTGGCTGT
CTGCTCCTATTTAGCTATAAAGGTCTATATATTTTTTTGTGACAGCTCTG
GGCACCTGGTGGTTCTGGCCAAATGGGGTCT
TTTTTTTTTTTTTTTNNCNCTNNTTNNNNNNNNNTTCTCTCTTCTTTCTC
TTTTTTTCTCNNCTCTCTTTCCTCNCCTCTCTCTTCTCCTCTTCCCCCCT
TTCGTTNTCTGCGTTTTCGTTTNCTCGTTCCCTCGGCAATGTTCANTANN
CCAATTCAATTACTAATCACCGATCGTCCTTCTTCTACTTCATCTGTATT
TTCCTTCTGCCTNTATCTTCAACAACAACACTGACTAACGGTCATGCTAC
CCAGCTGTCTGTATGCNACTGACGAATACCCCAGCATGACGACCCGCACC
GCACGAAATCACATCTATTTCTCTATACCTTCCCACCTTTTCTCTCTTCT
CTTTATCCTCCTACTTNTCTCTCCACTCTTCCGATCTACCAGCTATCGTT
ACNATTACGTATCGTTTCGTGCGCTTTNTATCTATTATATAGTTATATCT
GTACGACCGCTGTTTGCGTCTCCGCGCCGATTCTACTGCGCCTTGCTCAC
GTTGTTACACTCAGTCTATTACGCACGGAGCACGGACCGCTGATAGATGG
CTAAAACACAGACGATAAGCACTCAGAGAATAGCAGACAATATATCTTAA
GTGTATAATATCAATAATGGCGTCGTTATAAGACGAAGTACACAACAGTA
AGGACAAAGCGAGCGTGAATCGGTGACCGTGAATACGATACCATCCGTAT
CATACGGTCGCGCCGCGTATGTAATGCGATTTAATACACGTATGCANACA
CACTATTATGAGAGAACAACAAATAGCGATCACATATGATCATGAAGACG
GCGTGAAATCCGCTACGGACTGCGTAGTAGTTATGTATTGTGATGACACA
TGTACACGATCGCGTGTATAGGTCCCTGGCGCCGTGTGTTCGGCGCTCGC
ACGCGCGAGCGACAAAGTATGTCAGATGAGTAGGTGTGTCTGCAGAGTGT
GTGCGCGCGCGGGAGTGTAGTACGACGTGTTATGACGGGAACATGGGAGG
AGTCTACGCGCAAGAGGAGCAACAGAGGAAGGCAGAGATAGCGGATGGAT
ATACATNTTGACTAGNCGAGAGCATGCCGCATCGTACTGTTGTGCGCGCG
CACTTATGGACGTGACGCGCTGATGTTACCACGCAATGTGAGTTGCACAC
CGCCTCGCGACATAAGTATGATAAAACGAATACGCCTATATTAGAGCAAG
CGATTTATGACACCACGTGATTAGNCCGCGTCTAGTATTCCTCCCGACGT
TATATGTCCGCATGCGTGTATCGAGCCGACGCGTCACGCACTATAGTAAG
CTCGCGACACGCGATAGCGATAGAAGCTGGATGAGTGCACGAGGANGGCA
GGCGTGATTAATGTAGCATTGGAAGGGCGTCATAATNATTGACTTCGACT
GACGGAGTAAGCGTAGATAAACGCGTAACTAGAGTGTATATCACAANGTG
NATATTTGTNCGCGCGAACGACAGAGGTTTGCACCGCGCGACACGTATCA
CGAATNTTGTGCTAATCGCATGATAGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_j21.b1 MSMg01no086_j21.b1 CHROMAT_FILE:
MSMg01no086_j21.b1 PHD_FILE: MSMg01no086_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:26 2005
         (192 letters)



>mm_chr10_90881009_90881600
          Length = 592

 Score =  371 bits (192), Expect = e-107
 Identities = 192/192 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaacttttaaagtttctgatgtcattttgaaaagaaaacatcttttttttactgcatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaacttttaaagtttctgatgtcattttgaaaagaaaacatcttttttttactgcatgg 260

                                                                       
Query: 61  gcttctttattctaaatagcaatgcgtccttgctccttgaattcactgtcttatgtttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttctttattctaaatagcaatgcgtccttgctccttgaattcactgtcttatgtttct 320

                                                                       
Query: 121 ctaaggatatttgagtttgctttttctttctttttttcatattcatttactctatctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaggatatttgagtttgctttttctttctttttttcatattcatttactctatctcct 380

                       
Query: 181 caaccttccccc 192
           ||||||||||||
Sbjct: 381 caaccttccccc 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)