BAC Information

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BAC

Clone NameMSMg01-086N12
Chromosome10 (Build37)
Map Location 57,378,446 - 57,378,747
singlet/doubletsinglet
Overlap genePkib
Upstream geneLOC668355, LOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374
Downstream genePpia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086N12.T7 (MSMg01no086_n12.b1)MSMg01-086N12.TJ (MSMg01no086_n12.g1)
ACCAG306046AG306047
length681771
length of high quality
(start - end)
301 (45 - 345)---
definitionCHROMAT_FILE: MSMg01no086_n12.b1 PHD_FILE: MSMg01no086_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:44 2005CHROMAT_FILE: MSMg01no086_n12.g1 PHD_FILE: MSMg01no086_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACCTATATCCAGAGGATCCGCGGAATTCCCAAAGCTATTCTGAAAGGGA
AAGCTATCACCATCACTGTACACTGATGAATTTAATGTTGATGATAATAC
CAGTTTTAGAGCTTAGTGGGCAAAAGCACTTGCCACACAAGCTTGTCAAT
ATGAGCTCAATTTTGTGAAGCCACAGGGGGGAGAGAGAAGTGACTCCGAG
CATAGTCTTCTGACCTTCCTGCACATGTGTAGGTTTTGGATTATGCCAAG
GGATCTAGATTGTCAACTCTGGTTTGTCCCATCAAAAGGGTTCTTGATTG
TATTGAATGTGTCTCAACCCATTTCAAAGCAGCTTGCTAGTGCATGCTCA
GCGACTTTGGGTGTGCTAGATTTAGGATGCTGTGCTGCAATCAATTCCTG
TATAAACCATCATGCTATGGTTATCAATAATTGAACAAGTTATATTAGTC
ATTGAGAAGTCCAAAAGGACTCAGTGGTTGAGCTATTCCTAGATCATTCT
AACAGAAGTCAAATAAAGCAGTTAGGAACAGTGTGCTGCCATGTAAACTC
AATGAACTTACCAGTTACTGTAAATGAATCCATTCCACGCTTAATTGCTC
CCCTTTTCAGTTTGCCTTTATGAGCTCAGCTCTGGCTTTGCTTGCAACCA
TCTATGCTGTTTCCTGGACCCTGTTCGTACA
GGGGGGTGGGGGGGGGTGTGATTCTTCTTAACAGCTTTCCCCCTGTATCC
NNTCTCGATGATGTGGGAGGCCGGNGGNCGCCCGGTTTCGGACCCGNNNG
ANNNANNGAAGGTTAACAAAAGAGGGGGGNNNNNNGGNAANNNGAGNNCN
NGCAGAACNCAGNCNGGCCCGACCCCAGNCAGGANNNCNAAAGAGGAGCN
GGCNCGAGCNNGGNANAAACAAGAAAGGAACCAAGGCNACCCACAAAAAG
AAAACCCCAGGACAACCGCAAGAAAGGAACCCCNCCCNNGGGGGACGAGA
CAAGAATTTTCNCGGCACCCGGCNCNCCAACAGNNAACAGGCGAGAAGAA
GCGCANNGAAGAACAGAAAATTTTTTTTTGTGANAGCAAAGAAGCGAGCA
AGCAAGCCGGGAGGAGCCGCCACCACGGCACGAGAAAGGCAGCAAGAAAA
GCGGAGCAGGAGGGGGGAAGGGAACCCAAGACAACCGCAAGAGCGAGAGG
CGAACCGACCCAGAGCACGAGACACCGAAAGAGAACAAACCCAAAAAAGG
GCCCCAGACGGGACGAGAGCAAGGCCCAACCCCCACCAGGAGGGAAAGCA
ACGAAAAAAGGAAGGGCCAAACAAAGGAAAAGGAAAAGGCCAAAGAGGCC
ACGGGGACAAAGCCGGGCAAAACGAAGGCGGAAGCAGCAAAGAAGGAAGA
ACAACCGGCAAGGGGGAAAAAACGNCAAACAAGGTCTAGAGCAAGAAGAA
AGAGGGAAACCCCGGGGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_n12.b1 MSMg01no086_n12.b1 CHROMAT_FILE:
MSMg01no086_n12.b1 PHD_FILE: MSMg01no086_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:44 2005
         (301 letters)



>mm_chr10_57378247_57378947
          Length = 701

 Score =  553 bits (286), Expect = e-162
 Identities = 298/302 (98%), Gaps = 1/302 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagggaaagctatcaccatcactgtacactgatgaatttaatgttgatgataataccagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 200 aagggaaagctatcaccatcactgtacactgatgaatttaatgttgatgataataaaagt 259

                                                                       
Query: 61  tttagagcttagtgggcaaaagcacttgccacacaagcttgtcaatatgagctcaatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttagagcttagtgggcaaaagcacttgccacacaagcttgtcaatatgagctcaatttt 319

                                                                       
Query: 121 gtgaagccacaggggggagagagaagtgactcc-gagcatagtcttctgaccttcctgca 179
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 320 gtgaagccacaggggggagagagaagtgactcctgagcatagtcttctgaccttcctgca 379

                                                                       
Query: 180 catgtgtaggttttggattatgccaagggatctagattgtcaactctggtttgtcccatc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 catgtgtaggttttggattatgccaagggatctagattgtcaactctggtttgtcccatc 439

                                                                       
Query: 240 aaaagggttcttgattgtattgaatgtgtctcaacccatttcaaagcagcttgctagtgc 299
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaaagggttcttgattggattgaatgtgtctcaacccatttcaaagcagcttgctagtgc 499

             
Query: 300 at 301
           ||
Sbjct: 500 at 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)