BAC Information

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BAC

Clone NameMSMg01-087M07
Chromosome10 (Build37)
Map Location 113,695,755 - 113,696,346
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042655, LOC100042666
Downstream geneTrhde, 4930473D10Rik, Tph2, Tbc1d15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087M07.T7 (MSMg01no087_m07.b1)MSMg01-087M07.TJ (MSMg01no087_m07.g1)
ACCAG306700AG306701
length681691
length of high quality
(start - end)
299 (72 - 370)589 (103 - 691)
definitionCHROMAT_FILE: MSMg01no087_m07.b1 PHD_FILE: MSMg01no087_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:01 2005CHROMAT_FILE: MSMg01no087_m07.g1 PHD_FILE: MSMg01no087_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTCTGTTCTGAGCCCCATTTTTTAGTGGGGTTATTTGATTTTCT
GAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGATTTACGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTGCAAAAACTTTGGAGTTTCATTAG
GTCCCATTTGTCAATTCTCAATCTTACAGCACAAGCCATTGCTGTTCTGT
TCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTC
TCCTCTATAAGTTTCAGTGCCTCTGGTTTTATGTGAAGTTCCTTGAACCA
CTTACATTTGACCTTAGTACAAAGAGATAAGTATGGATCTCTTACACGCG
TTCTCTCGACCGGCCAGGAAAGACGCAACAAACCAGAATCTTCTGTGGCA
AAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGAGCATGAGAGAGAAAA
AGAATGGCAAAACCCCATCCCTTTTAAGGAGAATTATCCTCCGCCTAGGA
CGTATTACTCCCTGATTGGCTGCAGCCCATCGGCCCAGTTGTCATCACGA
GAAAGGCAGAACACTGGCGGGAAAACTGCCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAGAATCACAAGGATCTCCTCCATTTAC
AATTCGCAATGGAGAGGTCATATTACAAATGCCTCTCATCTCAGCATCCA
GCCCAAACATATGCTGCTGCTGAGAAAGACCAAGTCAATTTGCCTTAGGA
ACCAAATTTATGAGAGTGCCAATTATTTCAACAATTAAGGTAAATGATAT
CAAAGGCAACATAAACCCCTAAATAACTTAAAAATTACATTGTGCAATGA
TCAGATTTATCAAGGACCGTTTCTTCGTCTCTTTTTCTTCACTAGTGAAA
GAGTCGTTAATGCAAAAAGAGTGAATATGCACTCTAAACATTTATGTTTT
CCAGCAATACTAATATGAGATTTCACTTCTCATTACTTTTGCATATACTA
GGGTATGAAATTGAGATATTATGCTTTAACTGAAGCTATCAAAAACGTGT
TAATTAATAAGTCACTCAATGATTTTAATTTTATTTGTCACCTATCAACC
AAACTACCTTTAAAACAAAATTTATAGGATGTTTTTGTCATCAGGTTTCC
ATAGATTCATTTCTCAAGACACGTTGAAAGTAGAACTACATGGCATTTAT
AAATGCTGTAAAAAAAAAAGTTTTCCATTGACAGGAATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_m07.g1 MSMg01no087_m07.g1 CHROMAT_FILE:
MSMg01no087_m07.g1 PHD_FILE: MSMg01no087_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:01 2005
         (589 letters)



>mm_chr10_113695552_113696540
          Length = 989

 Score = 1056 bits (546), Expect = 0.0
 Identities = 578/592 (97%), Gaps = 6/592 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gcaatggagaggtcatattacaaatgcctctcatctcagcatccagcccaaacatatgct 63
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gcaatggtgaggtcatattacaaatgcctctcatctcagcatccagcccaaacatatgct 263

                                                                       
Query: 64  gctgctgagaaagaccaagtcaatttgccttaggaaccaaatttatgagagtgccaatta 123
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctgctgaaaaagaccaagtcaatttgccttaggaaccaaatttatgagagtgccaatta 323

                                                                       
Query: 124 tttcaacaattaaggtaaatgatatcaaaggcaacataaacccctaaataacttaaaaat 183
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttcaataattaaggtaaatgatatcaaaggcaacataaacccctaaataacttaaaaat 383

                                                                       
Query: 184 tacattgtgcaatgatcagatttatcaaggaccgtttcttcgtctctttttcttcactag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacattgtgcaatgatcagatttatcaaggaccgtttcttcgtctctttttcttcactag 443

                                                                       
Query: 244 tgaaagagtcgttaatgcaaaaagagtgaatatgcactctaaacatttatgttttccagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 444 tgaaagagtcgttaatgcaaaaagagtgaatatgcactctaaacatttacgttttccagc 503

                                                                       
Query: 304 aatactaatatgagatttcacttctcattacttttgcatatactagggtatgaaattgag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatactaatatgagatttcacttctcattacttttgcatatactagggtatgaaattgag 563

                                                                       
Query: 364 atattatgctttaactgaagctatcaaaaacgtgttaattaataagtcactcaatgattt 423
           || |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 564 atgttatgctttaactgaagctatcaaaaacttgttcattaataagtcactcaatgattt 623

                                                                       
Query: 424 taattttatttgtcacctatcaaccaaactacctttaaaacaaaatttataggatgtttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taattttatttgtcacctatcaaccaaactacctttaaaacaaaatttataggatgtttt 683

                                                                       
Query: 484 tgtcatcaggtttccatagattcatttctcaagacacgttgaaagtagaactacatggca 543
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tatcatcaggtttccatagattcatttctcaagacacgttgaaagtagaactacatggca 743

                                                               
Query: 544 tttataaatgctgtaaaaaaaaaa------gttttccattgacaggaataat 589
           ||||||||||||||||||||||||      ||||||||||||||||||||||
Sbjct: 744 tttataaatgctgtaaaaaaaaaaaaaaaagttttccattgacaggaataat 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)