BAC Information

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BAC

Clone NameMSMg01-088D05
Chromosome10 (Build37)
Map Location 27,002,751 - 27,003,079
singlet/doubletsinglet
Overlap geneLama2
Upstream geneL3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088D05.T7 (MSMg01no088_d05.b1)MSMg01-088D05.TJ (MSMg01no088_d05.g1)
ACCAG307021AG307022
length694677
length of high quality
(start - end)
622 (44 - 665)329 (349 - 677)
definitionCHROMAT_FILE: MSMg01no088_d05.b1 PHD_FILE: MSMg01no088_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:35 2005CHROMAT_FILE: MSMg01no088_d05.g1 PHD_FILE: MSMg01no088_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGACGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGCAAATGCAAATCAAAACAACTCTGAGATTCC
ACTTCACTCCAGTCAGAATGGATCAAAAACTCAGGTGACAGCAGATGCTG
GCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGATTGCA
AGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAATATTG
GACATAGTACTACCGGAGGATGCCGCAATACCTCTCCTGGGCATATATCC
AGAAGATGTCCCAAACGGTAAGAAGGACACATGCTCCACTATGTTCATAG
CAGCCTTATTTATAATAGCCAGAAGCTGGAAATAACCCAGATGCCCCTCA
ACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAATACTA
CTCAGCTATTAAAAAAAATGAATTTATGAAATTCCTAGGCAAATGGATGG
ACCTGGAGGGTATCATCCTGAGTGAAGTAACCCAATCACAAAGGAACTCG
CACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGGATA
CCCAAGATATAAGATACAACTTGCCAAACGCATGAAATTCAAGA
GGCGGCCGCCAGTCCGTAGCATGTAGGTGACCTATAGAATGCCTCAAGAA
ATTCAATTAAAATAAGTTTGTGAATTAAAAGTGTATACAAACAAAATTAT
CATTTTTAACATTGCAACATAGTTTCCATTGTAAAGAGACTGCTAAGGCA
GCATCATACACATATCAAACTGATAAAGATTAAAATTCTAATAATATGCT
CTATTAGTGAGTTTGGAGGGAAGAAGTATATTGAGTGAAGCATGTATACA
ATATAGAGGATCAACTGGGGAGTAACCATTTATAATAAAAAAACTATTCT
GNTGGAAATTCCCTCATGTCTATCAATACGGTTGTGTCACTGACAAAGAA
ATGATTTGAGTGTATACCAGGATTCAGTTACACAGTGCTGGGTGGCACTC
TGGGCTGTGGTTTTGCAAAAATTAACCTATTCTCAAAAGAAAATATGATA
TGCATGGCCTTGGGAGACAAGAATATTATTGTGGACATTGTATCACTTTA
ACCCTTGGGAAATTTGGAAAGATGACACCACATGTTCAAGGACGTGATGT
CACAGTGGGTGGTGGAACCAGGGTTAGCACTCCCAAGACTAGCTCAAGAA
TCAATGCTGAACATTTATTCTGAGTGCTAAGTCAATGTGAGGCTATTGAT
TCAACTGATGAAGCATTTTTCATGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_d05.g1 MSMg01no088_d05.g1 CHROMAT_FILE:
MSMg01no088_d05.g1 PHD_FILE: MSMg01no088_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:35 2005
         (329 letters)



>mm_chr10_27002551_27003279
          Length = 729

 Score =  629 bits (325), Expect = 0.0
 Identities = 328/329 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgatttgagtgtataccaggattcagttacacagtgctgggtggcactctgggctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgatttgagtgtataccaggattcagttacacagtgctgggtggcactctgggctgt 260

                                                                       
Query: 61  ggttttgcaaaaattaacctattctcaaaagaaaatatgatatgcatggccttgggagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttttgcaaaaattaacctattctcaaaagaaaatatgatatgcatggccttgggagac 320

                                                                       
Query: 121 aagaatattattgtggacattgtatcactttaacccttgggaaatttggaaagatgacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaatattattgtggacattgtatcactttaacccttgggaaatttggaaagatgacac 380

                                                                       
Query: 181 cacatgttcaaggacgtgatgtcacagtgggtggtggaaccagggttagcactcccaaga 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacatgttcaaggatgtgatgtcacagtgggtggtggaaccagggttagcactcccaaga 440

                                                                       
Query: 241 ctagctcaagaatcaatgctgaacatttattctgagtgctaagtcaatgtgaggctattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagctcaagaatcaatgctgaacatttattctgagtgctaagtcaatgtgaggctattg 500

                                        
Query: 301 attcaactgatgaagcatttttcatgtca 329
           |||||||||||||||||||||||||||||
Sbjct: 501 attcaactgatgaagcatttttcatgtca 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)