BAC Information

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BAC

Clone NameMSMg01-088F01
Chromosome10 (Build37)
Map Location 127,406,837 - 127,407,050
singlet/doubletsinglet
Overlap genenone
Upstream geneCtdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468
Downstream geneHsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088F01.T7 (MSMg01no088_f01.b1)MSMg01-088F01.TJ (MSMg01no088_f01.g1)
ACCAG307106AG307107
length673668
length of high quality
(start - end)		484 (44 - 527)232 (78 - 309)
definitionCHROMAT_FILE: MSMg01no088_f01.b1 PHD_FILE: MSMg01no088_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:44 2005CHROMAT_FILE: MSMg01no088_f01.g1 PHD_FILE: MSMg01no088_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATTCGGAGAGATCCGCGGAATTCTACTATTTCCTTTAATAGCTTA
TCCACAAGTCCTGGAAGAGCTCATCACGACCCTGCCGAATACTGGCTAAA
CTTTCACCAAGATCCCCTTTAATCGGTAACTGATTCCAAGTGCTGCAGGC
AGCCAGAGTAACCTGCACATATACTCCAACAGGAAACCCAACCTGATTAG
CATTGTTTTCATATTGACCTTCTCCTAAAAGCATGTTAAAATCCCAGCCT
GGGTTACCTGTCTGAGCATTCAAAGCGGCAGTTTTCTTACTGGCTTCTCA
GCATCCAGAATTCCAAAGTAAGAAATCTCCTCCTGACAAAATAGTCTTAC
ATAGAGTCTTCCAATCTTAGGGGGTTAAATTTAACTCCAGGACAGTATCC
AGTAATGCTTGTGTAAAAAGAACTGTAGGGTCATATTGTGCCACAGCTGT
TTTTAACTTCTTTATCACCTAGAACTCCAAAGTCTGATATTGTCTGACTC
TATTGCTTTGCTGGTCAATTATCTCAACTACAGGGAAAGCTAGCATAGCA
CATCATATGTATTCTGTCCTTTCCCTTGAGCCTGACTCACAGCTCTTTCT
AGTGGCGATTGGTATATCTCACAATAGCTGTTCTTCCCTGCATTTGAACT
TTTTTTTTTAACCCCTGTACTTC

AGXXXXXXXXXXXXXXXXXXXXXXXXAATGTTCCCTGACCGAAGGTCTTT
CTGATAGGGCCTATGTAATCCCCGGTGGTGTAATTTCTTATCTTTCCCAC
CACACTTGCTGGGGATCCATTCCAGGTCCCAGGGCTTCATGTGAAACAAA
CTCTGCAGGAAACCTACACCCCCCCGCCCCCCAGCTACATTCTCAGCTCA
TGAGACTCCTAAATTCTTACTCCCCATTTCTGTTCCTGACTCCTCTAAGA
CTGACTCTCATTCCCTACCCTGCCTGCTTCAACTTTTTTTTTTTTTTACT
TATACTACATGCATGTGCTGTGTGTGTGTGAGTGAGAGAGGTAGGTAGGT
CAGCTATTCCCTTCCTCACTTTAATTCTTTATTTCTCCCTACTTTCTCAT
CTTCTACCATTCTACCTTTCTCCTTCTTTCTCCCCACTTTACCCCTTCCC
TCCTCTCCTACTCCTTTCTTTTTCCCCCCTTCCTTCTTTTTCTTCCGCCC
CCCTTTTTTCTCTTTATTTCTCTCATTTTCACCATAACCACCCCATTTTT
CTTTCTCATATCCTTACGACATTCCATTTCCCGTCCCCTCCTCTCTTTCG
CCCTTTTTCTTCTTTATTTTGCCCCACCCACGCCTTTTTTTTTTCCGCTA
CCCCTCTCCCCCGTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_f01.g1 MSMg01no088_f01.g1 CHROMAT_FILE:
MSMg01no088_f01.g1 PHD_FILE: MSMg01no088_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:44 2005
         (232 letters)



>mm_chr10_127406637_127407265
          Length = 629

 Score =  387 bits (200), Expect = e-112
 Identities = 212/218 (97%), Gaps = 5/218 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgtaatttcttatctttcccac-cacacttgctggggatccattccaggtcccagggct 59
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 414 gtgtaatttcttatctttcccacacacacttgctggggatccattccaggtcccagggct 355

                                                                       
Query: 60  tcatgtgaaacaaactctgcaggaaacctacacccccccgccccccagctacattctcag 119
           ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||
Sbjct: 354 tcatgtgaaacaaactctgcaggaaacctacacccc----ccccccagctacattctcag 299

                                                                       
Query: 120 ctcatgagactcctaaattcttactccccatttctgttcctgactcctctaagactgact 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ctcatgagactcctaaattcttactccccatttctgttcctgactcctctaagactgact 239

                                                 
Query: 180 ctcattccctaccctgcctgcttcaacttttttttttt 217
           |||| |||||||||||||||||||||||||||||||||
Sbjct: 238 ctcactccctaccctgcctgcttcaacttttttttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 629
Length adjustment: 9
Effective length of query: 223
Effective length of database: 620
Effective search space:   138260
Effective search space used:   138260
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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