BAC Information

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BAC

Clone NameMSMg01-088P21
Chromosome10 (Build37)
Map Location 93,105,107 - 93,105,464
singlet/doubletsinglet
Overlap geneNtn4
Upstream geneNedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873
Downstream geneLOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088P21.T7 (MSMg01no088_p21.b1)MSMg01-088P21.TJ (MSMg01no088_p21.g1)
ACCAG307605AG307606
length687762
length of high quality
(start - end)
358 (39 - 396)353 (170 - 522)
definitionCHROMAT_FILE: MSMg01no088_p21.b1 PHD_FILE: MSMg01no088_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:39 2005CHROMAT_FILE: MSMg01no088_p21.g1 PHD_FILE: MSMg01no088_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATTCGGAGAGATCCGCGGAATTCAAGAGAGATCCTTTAACCGTGAGC
GGTTTGACAGATCCTTGGGGGTAAAAAAAAATAATGAATAATTTAAAAGT
TTCCACCCACTAATAATTTTGATAAGAAGTAGTTATCAGTGCAAACACAG
GCTGCACCCTGATAGAGGACGCAGCCTCTTAAGCCTGGACTTAGTTGCTG
GCAGCTCTGGGGAAAAGAATGGAAGCAGACCAACTGAAGAGATGCCTGCC
CCAGGGCTTGGAACCTTCCAGTCGGTTCCTCTAACCCACACGTCTCTTTC
AGGAGCAAGTCAAGTCCGTCTGAGGGGTTTGGGGTGGGGGATGAAATCAG
ACCCTCACAATTTTTCCCCACTACCCCACTGTGCTGTACTTAACCTAGCT
GAAAACCAGGTGGCCTGCGAGAAGGTAGGGGGAGAAGAGAAAGAGGAGGC
TCCCGGTTACTCAGACACAGCAAGCCTGGAACCGGTGGTCTAATGACAGT
CCAAGAGAGACTGGACCGTAGCGTGTGGGGAGAGGGGCATCTGCCCGTTG
CCTGTACGCCAGTTTTTGTGCCAAGGTGCTTTTTTGCCTTCGAGCTTCTG
TTGAGGTCCGTACTGGGTTGCGAGTCCCAAGGGGTTGACTGACTGTTCTG
CGGACGCTGCTTCTTGAGTGATTACCCCTATGTTTGT
NNNNNNNNNNNNNNNNNTTTTTTTNCCCTCCTTTCCTCTTATTTTTTTTT
CATGAAGTGGTAGCCTGGCGGCGCCTGTTCCCAAXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTTCACCAGGTTCAGGCTCAAACAAACAAAC
AAACAAAAAGATGTGGCCATTGACAGAAGACATTTTAATATCTACCTCTG
GTTCTACATCTGCCCGCATGAGCAAGTGCACCGGCATGCATACACATTAT
CTGTCTGTCTATCTATCTATCTGTGTATCTATCTATCTGTGTATCTATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTATCTACCTATTTATCTGTCTGTCACACATACACTATCTGTCTCA
CAGACTATCTATCTGTCACAAGACACCCTATCTATCACACAGATTCTATC
TATCATCTATCCATCTATCTACCTACTATTTATCTGTCACATACACTATC
AATCAAGCAATCTCTCTCTCACACAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGATAGAGAGAAAATAGAGGATAGTTGAGTATAAGTTATGCC
CTCAATATCTTCTTTTTATTTCCTAAACCTATATTTATTAGAATTTTTTC
TCTTTTTTTCTTTTCGCGTTTCCATTTTCTCAATCTGTTCGCTTTTTCCA
TTTTAATTTATTAATTTCAACAACCCCCTTTTTTTTTATCCCCTATCCTT
TGTCGTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_p21.b1 MSMg01no088_p21.b1 CHROMAT_FILE:
MSMg01no088_p21.b1 PHD_FILE: MSMg01no088_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:39 2005
         (358 letters)



>mm_chr10_93104907_93105664
          Length = 758

 Score =  692 bits (358), Expect = 0.0
 Identities = 358/358 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaccgtgagcggtttgacagatccttgggggtaaaaaaaaataatgaataatttaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttaaccgtgagcggtttgacagatccttgggggtaaaaaaaaataatgaataatttaaaa 499

                                                                       
Query: 61  gtttccacccactaataattttgataagaagtagttatcagtgcaaacacaggctgcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtttccacccactaataattttgataagaagtagttatcagtgcaaacacaggctgcacc 439

                                                                       
Query: 121 ctgatagaggacgcagcctcttaagcctggacttagttgctggcagctctggggaaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctgatagaggacgcagcctcttaagcctggacttagttgctggcagctctggggaaaaga 379

                                                                       
Query: 181 atggaagcagaccaactgaagagatgcctgccccagggcttggaaccttccagtcggttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atggaagcagaccaactgaagagatgcctgccccagggcttggaaccttccagtcggttc 319

                                                                       
Query: 241 ctctaacccacacgtctctttcaggagcaagtcaagtccgtctgaggggtttggggtggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctctaacccacacgtctctttcaggagcaagtcaagtccgtctgaggggtttggggtggg 259

                                                                     
Query: 301 ggatgaaatcagaccctcacaatttttccccactaccccactgtgctgtacttaacct 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggatgaaatcagaccctcacaatttttccccactaccccactgtgctgtacttaacct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)