BAC Information

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BAC

Clone NameMSMg01-089E01
Chromosome10 (Build37)
Map Location 115,245,172 - 115,245,367
singlet/doubletsinglet
Overlap genenone
Upstream geneTph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073
Downstream geneTspan8, Ptprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089E01.T7 (MSMg01no089_e01.b1)MSMg01-089E01.TJ (MSMg01no089_e01.g1)
ACCAG307799AG307800
length802832
length of high quality
(start - end)
143 (99 - 241)199 (130 - 328)
definitionCHROMAT_FILE: MSMg01no089_e01.b1 PHD_FILE: MSMg01no089_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:59 2005CHROMAT_FILE: MSMg01no089_e01.g1 PHD_FILE: MSMg01no089_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCTTTTTTCTCCCCCCCCCCCTTTTTCCCCCTTCCCTTTTTTCCCCC
CCCTTTTTCCCCTTTTCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
CCAGAGGATCCGCGGAATTCATCCCTGCACCACCTACCTATCTGGACATG
GTGGCACAAGCCTAAAGTCTTAGTGCTAGGTCAGGAGGATCTCTGGGCTT
TGCTGGCTAGCCAGTTCAGCCAAATTAGTGAGTTCCAGGTTCACTGAGAG
ACTCTGTCTCAATAAAGTGTTTGGAGGACCTGAAGATACGGTTTGATGGT
TAAGAGTGCTTGCTGCTCTTGCAGACAATCCAAGTTCATTTCACCAAAAC
CATTGCGGTTACCTCACAGCCACTTCTGATTCTAGCTCCAAGGAACTGGG
CACCTTTGGCTTCTGTAGATATTTGCACTCACATGTCCACACCACCCCCT
AACAGCATTAACTATTTTTAGCCTTACAAGCTGCATAGTGATGCAGCGAT
ACTTTTATCCCTGACCTTAGTCCCCCCCATTTATGTGTTTCCTTACGCAC
TTATTTAGGTTTCCCCTTTCCCTGTATCGACACCCTTTCTCTTCACCATC
TTTGCGCCCTGTCCCAATCTCTTCTTTTTTTTCTCCCCTCGCTTCCTTTT
TATTATTCCTCTATTCCAATCCGGTTTTCCCCCTTTTTTCCGCGCTTTTT
ACCCGTATCCTCACCCCCGCCTTACACCTTTTTTATTCTTTATTTTTTTT
CGGCCCGCCTCTAACCCACGTTCTTTTTTTTTTTCCCCCCGTCCCCCCCT
CC
TTTTTNNNNNNNNNNNNTTTNCCCCTTCTTTTTTCTTCTTCCCCTCCNCT
ACCNNTNAACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAAGAAAGACATCAGAAA
ACAAAACAGCAGGCAGAAAATATGTAATACCATGGAAGAAGATGACACAA
CATTTAAATGTGCCAGAGGGGTGTTCTGAAGTGGGAAGGAGAGAAAAGCT
CTCAATGAAGAGTGTGCTTGGTAAGTCTCAAAAGTAGCAGAGTGTTGAGG
GCTTAGGAGGGTGGGGGTGGGGGTGCCTCTTTCTCCCTCACTTCTTTCAT
CCATCCTCTTCTTCCCAAAAACTTTTTTTTTTTCTCCCCCACCTCTCTAC
TCCCTCCTCCCTTTCTTTACCTTTACTCCTTTTCCCTCTCCCCCCTACTC
TCCTTTTTTTACCCCTTCCCCCTCATATCTTCTCTTCACCTCTCTTCTTC
CTTATCCTTCTCCACTTTATCGCCCCTACTTCCCCCCTTATATTCTTATT
TTCCACTCTCCTGTCTTTTTTATACCCTCTTTCTCGCCTTTTCCCTCATC
TCTTCTCTCCTGATACATCGTTTCCGTCTTACCTTCATTCCCAACTAACC
CCTAACCCCCCTCCATTTTCCCTTACATTCCCCTTTCCTCTTCTTTCTTT
ATCCCCACCCCCCTCCTACTACCACCCAATACCTCCCTCTTCTCCCTCTT
ATTCCCCTCCCTACGTTTCATCCTCCTTATCCCGCCCCCCCCCCTTACTT
CTCCATACTCCCACTTGCTGTTTATCTCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_e01.g1 MSMg01no089_e01.g1 CHROMAT_FILE:
MSMg01no089_e01.g1 PHD_FILE: MSMg01no089_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:59 2005
         (199 letters)



>mm_chr10_115244972_115245570
          Length = 599

 Score =  342 bits (177), Expect = 7e-99
 Identities = 192/197 (97%), Gaps = 2/197 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcaagaaa-gacatcagaaaacaaaacagcaggcagaaaatatgtaataccatggaag 59
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcaagaaagga-atcagaaaacaaaacagcaggcagaaaatatgtaataccatggaag 259

                                                                       
Query: 60  aagatgacacaacatttaaatgtgccagaggggtgttctgaagtgggaaggagagaaaag 119
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aagacgacgcaacatttaaatgtgccagaggggtgttctgaagtgggaaggagagaaaag 319

                                                                       
Query: 120 ctctcaatgaagagtgtgcttggtaagtctcaaaagtagcagagtgttgagggcttagga 179
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 ctctcaatgaagagtgtgcttggtaagtctcagaagtagcagagtgttgagggcttagga 379

                            
Query: 180 gggtgggggtgggggtg 196
           |||||||||||||||||
Sbjct: 380 gggtgggggtgggggtg 396



 Score =  163 bits (84), Expect = 9e-45
 Identities = 87/88 (98%)
 Strand = Plus / Plus

                                                                       
Query: 109 ggagagaaaagctctcaatgaagagtgtgcttggtaagtctcaaaagtagcagagtgttg 168
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 432 ggagagaaaagctctcaatgaagagtgtgcttggtaagtctcagaagtagcagagtgttg 491

                                       
Query: 169 agggcttaggagggtgggggtgggggtg 196
           ||||||||||||||||||||||||||||
Sbjct: 492 agggcttaggagggtgggggtgggggtg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)