BAC Information

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BAC

Clone NameMSMg01-090A14
Chromosome10 (Build37)
Map Location 44,270,547 - 44,270,836
singlet/doubletsinglet
Overlap genenone
Upstream geneCd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1
Downstream geneLOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b, Dbil5-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090A14.T7 (MSMg01no090_a14.b1)MSMg01-090A14.TJ (MSMg01no090_a14.g1)
ACCAG308375AG308376
length811722
length of high quality
(start - end)
81 (40 - 120)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no090_a14.b1 PHD_FILE: MSMg01no090_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:03 2005CHROMAT_FILE: MSMg01no090_a14.g1 PHD_FILE: MSMg01no090_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXCTAATCCGAGAGAGATCCGCGGAATT
CATGTCCTTTCTGAGAAAGGTGAATGGTTGAGAAGCATTAAATTAAAAAT
ATCAAATAATCGAACCAAAAACATTTCCGGCCCACAGACTTTNTCTTAAA
CTAGTTTTATTTCATTTTAGTAGTGTGTGTGTGTAGTGTGTGTGTGTCGT
GTGTGTGTGTGTGTCGCCCCCACCCCTCCCCCCCCCCCCTCCCCCCACCC
ACACCCCCCCCCCACCTCCCTTCCCCCCCCAACCCCCCCCCCCCACCCCC
CCTATCACCCCCTCCAACACACCCCACCACTATTTCTCCCCCACCACCAT
CCTCACCTACCTAATAATAAATAACCGCAAATACTCTCCCCCTCACCCCA
CCCCAACCCCCCTCCCTTCCACCTCCTCACCATACACCCCCTCCCCCCTC
CACACACACAAACCACACCACACATCAATCCACACACCTTCCCCCCCACA
TACCACACCCCCCCTCCCCGTACCCACCTACCACCTCCCCCCCCCTCTCC
TTCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCACACTAACACG
TTAACCTGTTCACCCCCCCTCCTCTTCTCCATCACCCCACCTCCCCCTCC
CTCGCCCCGACCAAACCCCACTACCCACTCCTGCTCACCCTTTGCCCTAA
ACCCACTGCGACGCATGTAGCACCCCCCGCCCACCCGCCACCGCCACTCC
CACCCGCCTCGTCCCCCCGGCATAGCATCAGCACAACTACTTCACCCCCT
ACCGCCCCCCG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAGTGGTTGCCTTTGCCAGGAATAAAGA
TAGTTTCCTTTAATTTGTTCCACATTTCACTTCTGTGAAGTCATCCATTT
CACAACAAATCGCAATTGCACTTGGATTTGATCTTGAGGAACAAGTCCTG
ACCAGACAGAGAAAGAAATCACCCAGAAAGAGAACAATGAACACAAGACC
AGAGACCCCATGCATGGGAGCACGACTGGTATGATAAGGGACAGTAGAAC
AGCAGGGGTGGTCAGAGCCCTGCAGAAACAGACATGAGCTAAACAATATA
CAGACTTGATTTTCTTGACCCCACCCACCGCGGCAGCAGAAGGAATGGAG
TATTTAGACCATGTTAAAAGCCGGATAGAATGTGGTAGTGCACACCTTTA
ATCACAGAATTCAGAGGCAAAGGCACATGGAGCTTTGTGGTTTCTAGCCC
AGCCTGATGAGCCACATAGTTTTAGCCCAGCCAGGATTACATAATGAGAC
CCTGTCCCAAGCAAAACAAAGCATAACAAAATAATAATTAAAACAAGAAT
ATGCTTAAGTAATTGCATGAATCTAAACAAAATTATGAGGGACTTAGAAA
AGAAAGGAAGAAGAAAAGATGGAATATGAGGGTGGCTAAGAGTGGGCTTT
CTCTGCCAATTTAAGGCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_a14.g1 MSMg01no090_a14.g1 CHROMAT_FILE:
MSMg01no090_a14.g1 PHD_FILE: MSMg01no090_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:04 2005
         (291 letters)



>mm_chr10_44270347_44271039
          Length = 693

 Score =  507 bits (262), Expect = e-148
 Identities = 283/290 (97%), Gaps = 2/290 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtggttgcctttgccagg-aataaagatagtttcctttaatttgttcca-catttca 58
           |||| |||||||||||||||| |||||||||||||||||||||||||||| | |||||||
Sbjct: 201 agagaggttgcctttgccaggtaataaagatagtttcctttaatttgttcaaacatttca 260

                                                                       
Query: 59  cttctgtgaagtcatccatttcacaacaaatcgcaattgcacttggatttgatcttgagg 118
           ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 261 cttctgtgaagtcatccatttcataacaaatcgcaatggcacttggatttgatcttgagg 320

                                                                       
Query: 119 aacaagtcctgaccagacagagaaagaaatcacccagaaagagaacaatgaacacaagac 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaagtcctgaccagacagagaaagaaatcacccagaaagagaacaatgaacacaagac 380

                                                                       
Query: 179 cagagaccccatgcatgggagcacgactggtatgataagggacagtagaacagcaggggt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagagaccccatgcatgggagcacgactggtatgataagggacagtagaacagcaggggt 440

                                                             
Query: 239 ggtcagagccctgcagaaacagacatgagctaaacaatatacagacttga 288
           ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtcagagccctgaagaaacagacatgagctaaacaatatacagacttga 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 693
Length adjustment: 9
Effective length of query: 282
Effective length of database: 684
Effective search space:   192888
Effective search space used:   192888
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)