BAC Information

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BAC

Clone NameMSMg01-090D08
Chromosome10 (Build37)
Map Location 94,521,343 - 94,521,637
singlet/doubletsinglet
Overlap genenone
Upstream geneFgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1
Downstream geneCradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119, Eea1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090D08.T7 (MSMg01no090_d08.b1)MSMg01-090D08.TJ (MSMg01no090_d08.g1)
ACCAG308500AG308501
length695702
length of high quality
(start - end)
321 (43 - 363)294 (78 - 371)
definitionCHROMAT_FILE: MSMg01no090_d08.b1 PHD_FILE: MSMg01no090_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:18 2005CHROMAT_FILE: MSMg01no090_d08.g1 PHD_FILE: MSMg01no090_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGCAACTAATGAGTCCTGTGAGAGGGGAGAGGGGAGTTAGCTTCTCC
CAGGGATGAGCCCTCTTCTTGCTATCCAGTGCCCAGTGGTCAGCCCTGAA
ACCATATACAAGCAAGCATCATAACATAACATAACATAACATAACATAAC
ATAACATAACATAACATAACATAACATAACATAGTGTAACACATACAAAA
AACAAAAATAGTCTCAGCAGAATATATATGTATACATATATGTACTTATA
ATCTGTGCAAGCATATATACACACATGTAACAACTATAATTAAAGAAAAA
GAGGCAATTAATGATCATGACATGCGACAAGAGTTCAAGGGAAGGTAACT
GTGGCTCTCTGGTTCTTCACCTCTCCCTTGCATGTTTCAGAATTGGCTTT
TGTCAGCTTCTGTCTCTAAGATGCGTTGAGGCTTTGATTAGAAGCAATTG
GGTTTTCACGAAGATATGTCAGTGGTAAGGAAACACATTTTTATCTCAAC
TACTGGCCCTTGGAGCTGGCCTAACGTCTGACCCCCAAGGAGGAAAAGAT
GTTCTTCCATTTTAATTTTTAAATACTAGATAAAAAAAAAACTTTGGTGC
CCCTGGTTTCTGGTCTTTCATCCCCGTTGGCGCTAGTCCTACGCA
CAACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGGGGTAGAATTAGCGCCAT
TAACGCTGTCTACAGCTTACAGACACTCCCCCGACTGATCATTTGAAATC
GCCTTTCCTTTTTAGCGGACGCAAACATCACAGTCACTAATAAAAGGTTT
AAATTCTTTTTGCACCAGTGAAGAATTGGACTCTTGCCCCATGGACTCTC
ATTTATTAAAGGAAGGATGAAAGAACCATAAGGCACAGCATCTCGTATGC
ATATTTTATTCCCTTAGAAATCGCTGTGGAAATGAACCTTCTCCTGGGGT
AGTTATTTCATTTCTTGTCTTTGACACTACCACAGGAGGTTTAACTGTCT
TTCCCCAGTTACAAGATATTCATTAGGCAAAGTGAAGTGGCCGAAGGTCA
AGAAGACTGTGTCTAAAACCCACTTTCAAAGCTCAATGATGAAACTTGGC
AGGGATTCCCAATTGGGGATTCGGGAAGGTCAGAGACTGTCTGTGGCTGC
TTTCTGCGCCATGTCCTTCCAAGACTGACTAACTGTGGTCCCTAAGTTCC
CATTTTAAAAAAAAAAAAAAAAAGAAATTTGGTTTACAAAACTTGTCATG
TTCACAACTGTGCTACGTAACTCCGCCCAATGCCCGTTTAACATTTTCGG
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_d08.g1 MSMg01no090_d08.g1 CHROMAT_FILE:
MSMg01no090_d08.g1 PHD_FILE: MSMg01no090_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:18 2005
         (294 letters)



>mm_chr10_94521143_94521837
          Length = 695

 Score =  542 bits (280), Expect = e-158
 Identities = 292/296 (98%), Gaps = 3/296 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtggggtagaattagcgccattaacgctgtctacagcttacagacactcccccgactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtggggtagaattagcgccattaacgctgtctacagcttacagacactcccccgactg 260

                                                                       
Query: 61  atcatttgaaatcgcctttcctttttagcggacgcaaacatcacagtcactaataaaagg 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 atcatttgaaatcgcctttcctttttagcggacccaaacatcacagtcactaataaaagg 320

                                                                       
Query: 121 tttaaattctttttgcaccagtgaagaattggactcttgcccc-a-tggactctcattta 178
           ||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 321 tttaaattctttttgcaccagtgaagaattggactcttgcccccactg-actctcattta 379

                                                                       
Query: 179 ttaaaggaaggatgaaagaaccataaggcacagcatctcgtatgcatattttattccctt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttaaaggaaggatgaaagaaccataaggcacagcatctcgtatgcatattttattccctt 439

                                                                   
Query: 239 agaaatcgctgtggaaatgaaccttctcctggggtagttatttcatttcttgtctt 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agaaatcgctgtggaaatgaaccttctcctggggtagttatttcatttcttgtctt 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 695
Length adjustment: 9
Effective length of query: 285
Effective length of database: 686
Effective search space:   195510
Effective search space used:   195510
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)