Query= MSMg01no092_d23.b1 MSMg01no092_d23.b1 CHROMAT_FILE:
MSMg01no092_d23.b1 PHD_FILE: MSMg01no092_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:02 2005
(644 letters)
>mm_chr10_105569196_105570235
Length = 1040
Score = 996 bits (515), Expect = 0.0
Identities = 580/605 (95%), Gaps = 9/605 (1%)
Strand = Plus / Minus
Query: 7 ggaattcttggatcaatttgagttataggagtttatctagaggataaactatagtttagt 66
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 800 ggaattcttggatcaatttgagttataggagtttatctagaggataaacta-----tagt 746
Query: 67 ttataattattttagccccaaaatagaatatggatagaaaacgcgatttacacattgttt 126
|||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct: 745 ttataattataagagctacaaaatagaatatggatagaaaacaccatttacacattgttt 686
Query: 127 ttaaatgcatggccactcttacccatgacaaataccacttctttttacatcttatgtttt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttaaatgcatggccactcttacccatgacaaataccacttctttttacatcttatgtttt 626
Query: 187 tctgtataaaggaagacaacaaaattgcaatgcaatggcttctcatgacttgatgcaaag 246
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 625 tctgtgtaaaggaagacaacaaaattgcaatgcaatggcttctcatgacttaatgcaaag 566
Query: 247 taggcttctttactttcacagttctataacac--atgtcagttgtacaattatttaaccc 304
|||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 565 taggtttctttactttcacagttccataacacttatgtcagttgtacaattatttaaccc 506
Query: 305 aacatgccagaaattatgtctctataatctctgtataatatagtaatgtaagtattgatt 364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacatgccagaaattatgcctctataatctctgtataatatagtaatgtaagtattgatt 446
Query: 365 tctactcacactttcaagtcctgtaactgtgtttccatgatggtgtcaataagctgaagt 424
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 tctactcacactttcaagtcctgttactgtgtttccatgatggtgtcaataagctgaagt 386
Query: 425 cgtgccgagtgtaggcaggcaaatataaatactaagaagttttctggtagtgttgaacta 484
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catgctgagtgtaggcaggcaaatataaatactaagaagttttctggtagtgttgaacta 326
Query: 485 ggagtcatagaacataaaagtaatgcaacacaactctatcttcttttaaacttctgggtc 544
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 ggagtcatagaacataaaagtaatgcaacacaactctatcttcttt-aaacttctgggtc 267
Query: 545 tgtaatgactactttattgagatgggattgttttcagtattgaggatgtaaacattgggc 604
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgtaatgactattttattgagatgggattgttttcagtattgaggatgtaaacattgggc 207
Query: 605 ctttt 609
||||
Sbjct: 206 -tttt 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1040
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1030
Effective search space: 653020
Effective search space used: 653020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_d23.g1 MSMg01no092_d23.g1 CHROMAT_FILE:
MSMg01no092_d23.g1 PHD_FILE: MSMg01no092_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:02 2005
(564 letters)
>mm_chr10_105481789_105482755
Length = 967
Score = 812 bits (420), Expect = 0.0
Identities = 538/588 (91%), Gaps = 26/588 (4%)
Strand = Plus / Plus
Query: 1 tcacattccatgtattgaagttgttttcccatcttcttgtacatcttccttattcagtca 60
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 182 tcacattccatgtattgaagttgttttctcattttcttgtacatcttccttattcagtca 241
Query: 61 cattttcctataactggctggcatctctggctccttctcctgctttaaaaaaaaagtatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 242 cattttcctataactggctggcatctctggctccttctcctgctttaaaaaaata-tatg 300
Query: 121 aacaaatggagc-tatctgcataatgctggttaattttcctgctttatattttattatta 179
||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 aacaaatagagcctatctgcataatgctggttaattttcctgcttt-tattttattatta 359
Query: 180 ttatt---------gttattattatgtgcactgtgtgtgcatttgtgcatgcatgtgcac 230
||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 360 ttattattgttattgttattattatgtgcactgtgtgtgcatttgtgcatgtgtgtgcac 419
Query: 231 gtacatatgcgtgt-t-tac-acat--------acacatacctatcatggtgtatgcata 279
|||||||||||||| | || | || |||||||| ||||||||| ||| ||||
Sbjct: 420 gtacatatgcgtgtgtgtatgatatgtgtgtttacacatacatatcatggtatattcata 479
Query: 280 gaggtcagagggattcttgtgtgagtcggttagttcgttttccaccatgtaggtcccagg 339
||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 480 gagatcagagggattcttgtgtgagtcagttagttcattttccaccatgtaagtcccagg 539
Query: 340 gatttaaatcaggtcattaggcttggtggcgtgtggtcatca-tcttaatagccatagtt 398
||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct: 540 aatttaaatcaggtcattaggcttggtggcgtgtggtcatcaatctcactagccatagtt 599
Query: 399 tttcaattttaaaacaaacttattaagcaaaattatccaccgttgtaaacttcgagtccc 458
|| ||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 600 ttccaattttaaaataaacttattaagcaaaattatcccccgctgtaaacttcgagtccc 659
Query: 459 tttgcttctatatttata--agttcccacagtgaaaacagaggtggctcagtggaaccat 516
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tttgcttctatatttatataaattcccacagtgaaaacagaggtggctcagtggaaccat 719
Query: 517 tattctgctcactgcaactaactcttttaaccatgtgtttgtcttggt 564
|||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 720 tattctgctcactgcaactagctcttttaaccatgtgtttgtcttggt 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 967
Length adjustment: 10
Effective length of query: 554
Effective length of database: 957
Effective search space: 530178
Effective search space used: 530178
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
