BAC Information

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BAC

Clone NameMSMg01-092P14
Chromosome10 (Build37)
Map Location 16,563,273 - 16,563,809
singlet/doubletsinglet
Overlap geneLOC100039576
Upstream geneLOC382457, LOC546472
Downstream geneLOC627511, Cited2, Txlnb, LOC665321
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092P14.T7 (MSMg01no092_p14.b1)MSMg01-092P14.TJ (MSMg01no092_p14.g1)
ACCAG310533AG310534
length647756
length of high quality
(start - end)
450 (27 - 476)537 (141 - 677)
definitionCHROMAT_FILE: MSMg01no092_p14.b1 PHD_FILE: MSMg01no092_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:01 2005CHROMAT_FILE: MSMg01no092_p14.g1 PHD_FILE: MSMg01no092_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGATCCGCGGAATTCATTATCACGTCTAGCTCGAAACTCTACAGTCTAT
AACAAAAACCTGTCAGGCCCAATAGTTCAATAGTGGCACAAGTATGGGAG
TAAACAGATATCTCTGATTGAGTTTGGTTCCCATTCCATAGAAGATAATT
CATACTTGGATATTTTAAAACTAGGCAAAAGTAATGGTGGGAATATTATA
GGTCATATGTTAAAATAAATATGGTTGCTTAACTATGTTGTCATAGTTTC
AAGATCATTTCTAAATATTTATTATAATATTTATAGACAAGTGCTATTCC
CAGCCTTAATCAGACAACCCTTTCTCCAGGGAATAGTATGGAATAAAATA
CTCAGAGCTTCAAAAGGTGGTGAAAATAAATGAGAGCTGAGTGATCAATC
CTAAATTACACATTTATTCTTCCCAATTAAAATCAAGAAAAATAGACAAG
CGATGATAGAATGGCTCTTGGGGATAAGAATGGTTATTAAATATTATCTG
TGTTTAAGACACAAACACATTGTGTGCATAAGAATGGGCATGTCAACAAC
CAGACAAAGATGCTGGGATGCTTCTGGTATCCCTAAATAGCATTGGTGAA
CTATTTGCAATGTACAGGTTTGGGGAGACAGAGAATTATTCCTTTTG
NNNNNNNNNNNAAAGGGGNNNNNNNNNNNNNNNNNCNNCNNNNNCNNCNC
ATACCNNCCCNNCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTATTTACT
GTTACAATAAAAAGACAGAAACTGAGACTTCTTAGATTAGAATAATAAGA
ACAGACATAAGGACTCTAGGAAAAATTTAGAAAGACTTTCAATCAAGTTT
ATGAGCAAGAAAAAAGATAACTTCAAGGGTTTTGTAAAGTTGACAATTTC
ATAGGTATATTTTTCCTTTACTGAGAAAAAGAATTGTGGGAGATAACCAC
TTCCAAGCTATGATTTTGGACTTCTAAGTTTGGTATACAGTTGAGAATTT
AAAGACACGGTGGAGTAGGTTGAGAAGAGGCTATGACAACAGATATAATT
ATTAGAATTTTATGCATAAACATGAAGCCAGATAGGTGAATAATAGCCTT
CTGTTGATAGGACTATTTAATAGGAAGATACAAGTGTTTTCAGAGAATAT
CAAGATCAAAAAGATGTGCAAAAGAAATCTCAGAGAAAATCATGTTCTCA
AGGTAGAATATATCATATCTATTATACTGATAAGAAATGAAGGCTCAACA
ATAACTCTTATCTATATATTTTAGAGGTCATCTAGTTTTTATTACTTAAC
TTTCTAGACCAGTGTCCAAAATCCTCAAAGAACAGCTTTCAAAAGGAAGT
TTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_p14.g1 MSMg01no092_p14.g1 CHROMAT_FILE:
MSMg01no092_p14.g1 PHD_FILE: MSMg01no092_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:01 2005
         (537 letters)



>mm_chr10_16563073_16564009
          Length = 937

 Score = 1031 bits (533), Expect = 0.0
 Identities = 536/537 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtatttactgttacaataaaaagacagaaactgagacttcttagattagaataataaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 agtatttactgttacaataaaaagacagaaactgagacttcttagattagaataataaga 678

                                                                       
Query: 61  acagacataaggactctaggaaaaatttagaaagactttcaatcaagtttatgagcaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 acagacataaggactctaggaaaaatttagaaagactttcaatcaagtttatgagcaaga 618

                                                                       
Query: 121 aaaaagataacttcaagggttttgtaaagttgacaatttcataggtatatttttccttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaaaagataacttcaagggttttgtaaagttgacaatttcataggtatatttttccttta 558

                                                                       
Query: 181 ctgagaaaaagaattgtgggagataaccacttccaagctatgattttggacttctaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctgagaaaaagaattgtgggagataaccacttccaagctatgattttggacttctaagtt 498

                                                                       
Query: 241 tggtatacagttgagaatttaaagacacggtggagtaggttgagaagaggctatgacaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tggtatacagttgagaatttaaagacacggtggagtaggttgagaagaggctatgacaac 438

                                                                       
Query: 301 agatataattattagaattttatgcataaacatgaagccagataggtgaataatagcctt 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agatagaattattagaattttatgcataaacatgaagccagataggtgaataatagcctt 378

                                                                       
Query: 361 ctgttgataggactatttaataggaagatacaagtgttttcagagaatatcaagatcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctgttgataggactatttaataggaagatacaagtgttttcagagaatatcaagatcaaa 318

                                                                       
Query: 421 aagatgtgcaaaagaaatctcagagaaaatcatgttctcaaggtagaatatatcatatct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aagatgtgcaaaagaaatctcagagaaaatcatgttctcaaggtagaatatatcatatct 258

                                                                    
Query: 481 attatactgataagaaatgaaggctcaacaataactcttatctatatattttagagg 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 attatactgataagaaatgaaggctcaacaataactcttatctatatattttagagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)