BAC Information

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BAC

Clone NameMSMg01-093C21
Chromosome10 (Build37)
Map Location 36,529,961 - 36,530,295
singlet/doubletsinglet
Overlap geneHs3st5
Upstream geneLOC667860
Downstream geneHdac2, Marcks, LOC100040846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093C21.T7 (MSMg01no093_c21.b1)MSMg01-093C21.TJ (MSMg01no093_c21.g1)
ACCAG310689AG310690
length1,3071,253
length of high quality
(start - end)
103 (119 - 221)335 (112 - 446)
definitionCHROMAT_FILE: MSMg01no093_c21.b1 PHD_FILE: MSMg01no093_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:27 2005CHROMAT_FILE: MSMg01no093_c21.g1 PHD_FILE: MSMg01no093_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTGGCCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCTTTGTT
TAGCTCTGTCCCTATAAATTTATAGATTTATTTGATTTTCTGGAGTCCAC
CCTTTAAGAGTTCTCCCCATATATTGGATATTAGTCCCCTATCAGATTTA
GGATTGGTAAAGATCCTTTCCCCCCCTGTTGGTGGTTGGTTTGTCTTATT
GACAGTGTCTTTTGCCTTACTGAACCTTTGCAGTTTTATGGGGTCCCATT
TGTCAACTCTCGATCGTACTGCACCAGTCATTGGTGTTTTGCTCAGGAAT
TTTTCCCTTTTGCCCATATCTTTGAGGCTTTCCCCCACTCTCTCCTTCTA
TAAGTTTCTGTGTCTCTGGTTTTATGTGCCGTTTCTTGTTTTTTTTTTCC
ATGAGCTTTGTTCTAGGTATTATTAATTCCTTTTTTTTCCCTCCCTTTTT
TTTTCCCCCCCCCCTATTTTGTCTCTTTACCTATTTTAAAAAAAATGCTG
TCTTTTCTTTCTTACTTGTTTGTTTTTCCTTTCTTCTTTTTCTTTGTCTT
TTTTTTGTTTCTTTTTCTTTTTTTTTTTTATTTTTTGTCTTTTTTTTTTT
TCTTTTTTTTTACTCTTTTATTATTTCTTTACTTGTTTTTTTTTATCTTT
CTTTTTTTTTTTTTTTCTTCTTTTCATTTTCTTTTTTTTTATTTTTTTCA
TTTTCTTTCTTTTTTTTTCTTTATCTATTTTTTTTTCTTTATTTTTTCTT
TCTTTTTTTTCTTTTTATTTCTATTTTTTTTTATTCTTATTATTTTTTTC
CTTTTCTTTTATTCTTTCTTTCTTATTTATTTTCTTTCTTCCTTTTTTTT
TTTTCTTTCCTTTCTTTTTTTTTTTCTTTTTTTTCTATTTCTTTTTTTTT
TTTCTCTTTTCTTTTTTTCTTTCCTTTTTTTTTTTCCTTTTCTCTTTTTT
TTTTCTTTTTTCCTTATTTTTTATTTTTTTTCTCTTTCTTTTCTTCTTTT
TTATTTTATTTTTTTTATATTTCTTTTTTATTTTTTTTTCTTCTTTTCTC
TTTTTTCTTTTCCCTATTCTCATTATCTTTTCTATCTTCTTATTTTTTCT
TTTTTTTATTTTTTTTTTTTCTTTTTTTTATCTTTCTTATTTTACTCTTT
TTTTCTTTTTTTTACTTCTTTCTTTTTATGTTGCCTCTTTTTTTTTTTTT
TTCCTTTTTCTCTTTGTCTATTTTCTCTTTTCTCTTTTTAATTTTATTTT
TTTTTCTTCTTTATTTTTTCTTTTTTTTTATTATTTGTTTTTACCTTCTT
TTATTTG
CACATGGTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCCTTTTATTTAACCCCCAAATGGCTTACTTGTGTGTTC
TTCCCTAATGTCACTTTCCCAGATTAAGAATGTGTCTTTTCATTATTGAA
TTATCACCCGCACTTAAGGTGGCAGATGCTCAGCAAACAATTGCTGAATA
ATCAAGTCAGTTAGATGGGGAAGGACTTTAATATCCTGAAAGCTGTGACG
CCTGGTTGCTGCCTCTTTTTAACTGAATAGAGACACTTTATCTTTGCCTG
CTGTTGGCAGGCTCATCAAGTGCTGTGCATCTGAAAGTGATCTCATTTTC
CTGCCTTTTTGAGAAAACCTGGGTGCTTATGTATCCCTTGCCTATTTTCC
ACAGCTGTTAACATTTTGGTATCTATATGCTTTATGTCCCACTTATTGCT
ATGTCCGCACATACTAATTTTACAAAGCCATTTAAAAACAAATGGCCGAA
CCCAGCCTTGCATCATCCATAGGCCCCTCATGATGACCACCAGACTTGAG
AGGCAACAAGGTCATTCACATTCCTGTCTCATAGTCTTATGAGTTGCCAC
GTCCCAGTGAGAGCTTCTAACTGTCTATTCTATTGACTGTTATCTGTTAC
CCTTCTTATCTCCATCTTTCTCATCTTTTTCTTCTAGGTATCGTTGCACA
CTTTATTTTTTCTCCTTGTTTAATTTTGTGTTTTTTCCCCTTTTTCCTAA
TTTCCTTCTCTATTAACTTTCCTTTATCTTTGTGTTCTTTTTTTTTTTTT
TTTTCTTTTATCTCACTTACCTTTTTTCTTTCCTTTCTTCCTTACTTTTT
TTTTTTTTTTTTTTTACTTCTTATTTTTCTCTTTTTTATATTTTTTTTTT
TTTCTATCTTTATTTTTTCCCTCTTTCTTTCATTTTTCTATTTATTCACC
TTACTATTTTTTTCTATCTTTCTTTCCTCTACATTTTTTCCTCTTTTATT
TTCTTTTATATTCTCTCTTCATTTTTTTCTTCCTTTTTTCTCTATCTTTT
TTCTTCTTTCATCTTTNTTTCTTTTCTTCTTCTTTTCTTTCTTTTTTTCT
CTTCTTTCTTCTCTCTTTCTACTTATCTCCTTTTCTTTTTCGTCTTATCA
TNTTTCTCCTTTTCTTTCCTCCTCTTATCTCCTCCTCTTCTCTTTTTCTC
ATCTCTTTTATTTTACTTCTTTATCTATTCACTTCTTCACTTTATATCTT
TAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_c21.g1 MSMg01no093_c21.g1 CHROMAT_FILE:
MSMg01no093_c21.g1 PHD_FILE: MSMg01no093_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:28 2005
         (335 letters)



>mm_chr10_36529761_36530495
          Length = 735

 Score =  617 bits (319), Expect = 0.0
 Identities = 331/335 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactttcccagattaagaatgtgtcttttcattattgaattatcacccgcacttaaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 cactttcccagattaagaatgtgtcttttcattattgaattatcacccgcacttaaggtg 476

                                                                       
Query: 61  gcagatgctcagcaaacaattgctgaataatcaagtcagttagatggggaaggactttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gcagatgctcagcaaacaattgctgaataatcaagtcagttagatggggaaggactttaa 416

                                                                       
Query: 121 tatcctgaaagctgtgacgcctggttgctgcctctttttaactgaatagagacactttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tatcctgaaagctgtgacgcctggttgctgcctctttttaactgaatagagacactttat 356

                                                                       
Query: 181 ctttgcctgctgttggcaggctcatcaagtgctgtgcatctgaaagtgatctcattttcc 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctttacctgctgttggcaggctcatcaagtgctgtgcatctgaaagtgatctcattttcc 296

                                                                       
Query: 241 tgcctttttgagaaaacctgggtgcttatgtatcccttgcctattttccacagctgttaa 300
           |||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||
Sbjct: 295 tgcctttttgagaaaacctgggtgcttatgtatcccttgcctagattccacagttgttaa 236

                                              
Query: 301 cattttggtatctatatgctttatgtcccacttat 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 cattttggtatctatatgctttatgtcccacttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)