BAC Information

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BAC

Clone NameMSMg01-094G17
Chromosome10 (Build37)
Map Location 32,186,491 - 32,187,017
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneIbrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761, Trdn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094G17.T7 (MSMg01no094_g17.b1)MSMg01-094G17.TJ (MSMg01no094_g17.g1)
ACCAG311597AG311598
length658695
length of high quality
(start - end)
296 (36 - 331)527 (54 - 580)
definitionCHROMAT_FILE: MSMg01no094_g17.b1 PHD_FILE: MSMg01no094_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:03 2005CHROMAT_FILE: MSMg01no094_g17.g1 PHD_FILE: MSMg01no094_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGATCCGCGGAATTCTTTGTTCACCTCTGAGCCCCATTTTTTAATGGGG
TTATTTGATTTTCTGAAGTCCACCTTCTTGAGCCCTTTATATATGTTGGA
TATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTG
TTGGTGGTCTTTTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTT
TGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGC
CATTGCTGTTCTGTTCAGGAATCTTTCCCCTGTATCCATATCTTCAAGGC
TTTTCCCCACTTTCTCCTCTATTTTTTTCACCGCCCCCCCTTTTATGTGA
AGTTCCTTGATCCACTTAGATTTGACCCTAAAACAAAGAGATAAACAATG
GATCGATGCGCGATCTTCCACATGATAACAAACAGATGTGCCAGCACCAA
TTGCTGTAAATGCTGTCTTTCTTCCACTGTACGAATTTAGCTCCCTCGTC
AAATATCATGTGATCATACGTGTGCGGACTCATCATCTTCCTCCTCTCAC
TTAACTCCATTGTCCAACTTCTCTGTCTCTATTCCCTCACAACGCCGTCT
TTATATCTTGTTTCCTGCTTCATATATTTTAGTTGAATTATTTCCACTCC
TCTTACCC
TGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTGCTGATAGCCTTCAGATGAAGATTTAGAACTCTCAGCTCCTCCCAC
ACCCTGCCTGCCTGGATGCTGCCATGTTCCTGCCTTTATGATAATGGACT
GAACTCTAAACCTGTAAGCCAGCCCCAATTAAATGTCATTTATAAGACTT
GCCTTGGTCATGGTGTCTGTTCAAAGCAGTAAAATCCTAACTAAAACAGC
ATGTGTGATAGAACTTAACATTTGCTAATGCACTTATAATTGAATTGCTT
AATTGTTTCATTTAAAATTATCCTCTCTCACAACATATAATAAGGGGATA
ATTTACCTGAATATTCATGCAGTCAGCACGGTTTGTCTCAAAAATGATGA
TTGACTTTGCTAATATTTAATTAGATTAATTGTTAGAAAATAACTGAGCA
AACTAGGACTTGAGCAATTAGGTATCATGCCTGGGCTATATGATGCTTAA
AAGACAGAAATTGTTAGACAAACTGATTCTTAAAAATGAATCCATAGACT
TCTGAGAGGAAATAAGGAAAATTACTAAAGAGAAGTTGGCTTGATAAATA
TCTTGATTTTACAACCTTGAAAAAAAAAATGTATACTAGGAATGACATTC
AAAGCACAGACAAAAACTCATCCTGTAAGCCAACCAGTTTGTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_g17.g1 MSMg01no094_g17.g1 CHROMAT_FILE:
MSMg01no094_g17.g1 PHD_FILE: MSMg01no094_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:03 2005
         (527 letters)



>mm_chr10_32186291_32187217
          Length = 927

 Score =  980 bits (507), Expect = 0.0
 Identities = 522/527 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgatagccttcagatgaagatttagaactctcagctcctcccacaccctgcctgcct 60
           ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 201 tgctgatagccttcagatgaagatttaaaactctcagctcctcccacaccatgcctgcct 260

                                                                       
Query: 61  ggatgctgccatgttcctgcctttatgataatggactgaactctaaacctgtaagccagc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatgctgccatgttcctgcctatatgataatggactgaactctaaacctgtaagccagc 320

                                                                       
Query: 121 cccaattaaatgtcatttataagacttgccttggtcatggtgtctgttcaaagcagtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaattaaatgtcatttataagacttgccttggtcatggtgtctgttcaaagcagtaaa 380

                                                                       
Query: 181 atcctaactaaaacagcatgtgtgatagaacttaacatttgctaatgcacttataattga 240
           ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 atcctaactaaaatagcatgtgtgatagaacttaacaattgctaatgcacttataattga 440

                                                                       
Query: 241 attgcttaattgtttcatttaaaattatcctctctcacaacatataataaggggataatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgcttaattgtttcatttaaaattatcctctctcacaacatataataaggggataatt 500

                                                                       
Query: 301 tacctgaatattcatgcagtcagcacggtttgtctcaaaaatgatgattgactttgctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacctgaatattcatgcagtcagcacggtttgtctcaaaaatgatgattgactttgctaa 560

                                                                       
Query: 361 tatttaattagattaattgttagaaaataactgagcaaactaggacttgagcaattaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatttaattagattaattgttagaaaataactgagcaaactaggacttgagcaattaggt 620

                                                                       
Query: 421 atcatgcctgggctatatgatgcttaaaagacagaaattgttagacaaactgattcttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcatgcctgggctatatgatgcttaaaagacagaaattgttagacaaactgattcttaa 680

                                                          
Query: 481 aaatgaatccatagacttctgagaggaaataaggaaaattactaaag 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaatgaatccatagacttctgagaggaaataaggaaaattactaaag 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)