BAC Information

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BAC

Clone NameMSMg01-094I22
Chromosome10 (Build37)
Map Location 13,865,229 - 13,865,747
singlet/doubletsinglet
Overlap geneHivep2
Upstream gene4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859
Downstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094I22.T7 (MSMg01no094_i22.b1)MSMg01-094I22.TJ (MSMg01no094_i22.g1)
ACCAG311697AG311698
length684705
length of high quality
(start - end)
325 (43 - 367)518 (74 - 591)
definitionCHROMAT_FILE: MSMg01no094_i22.b1 PHD_FILE: MSMg01no094_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:15 2005CHROMAT_FILE: MSMg01no094_i22.g1 PHD_FILE: MSMg01no094_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGCACAGCCAGGGCTATACATAGAAACCCTGTCTTGAAAAAAAAAAA
CAAAACAAAAAAAATTTACCGAGAATTGACCATAATGGCTAATTAGGGGT
GCAATTTGACTGCATTAGTAATGTATCGTTTCTGAATGTGACTATGAAAA
TGTGTCTGTAAGAGACTGGCATTTATAGTAGCAGGCTAAGTAATGAAGAT
CCAGCACTGCCCAATATAACATGTGGGTATCATCCAATGCATTAAAGGCT
TAATAGAACAAAAGGTCAGAGTAAATATTCTCATATATTCTCTCTTTCTC
CCTATGGATCTATCTACCGACCGATTGATCTCTATCTAGCTACCTACCTA
CCTATCTATTTTCACCAGACCTCCCTTCCTCTATTTCTTCCTGCCTGCCT
GCCTGCCTGCCTGCCTGCCTGCCTCCTTCCCTCCTTCCCTACCTTTCTCC
CTTCCTCCTTTGCTCTACTGTAGCTGGAAAGTTTTATGCTGTTGCAAGAC
TCTTGCACGCTGGGTTTGTGTTTTCTCCAGCATGGTCCGTATAACTTGAA
GCAGAAAGCCTGGGCATCCTCAGGGTGCTTGGAGATCTCATTTTTCAGCT
TCAGTATCAGCTCTTGCACAACTGTTCTCCCCTG
GAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTAACTAATTAAGAATAAAATAAAAC
AGAATAAAATAATTCATTTATTTTGGACCTTTGAATCCCTACAAAGTTAA
TTAAGAAATTTAGTGCCAAACAAGAAAATAAGTTTCACCAGTTACTGAGT
TTTTCCTAAATTTTTGTGTGGTTTTATTTCATTTCATTTTGTTCCTAAAA
TCTCTGGATGCCTCACAGAGCTCATCCTTCATCCCCAACAAATCCTCTGG
CTTGCTACCCAGTCCAGTTATCTTTAAAGAAAAAATGCCCCCTTGCTGCT
TGTTCTCATAGGAGGCAGCAGAGCTGGGATTCAAGCAGGAGCCCTGTCCT
GAGTCCTCATGTTGTGTTGACTGGTCGCCTCTGGATGGCAGTGACAACTA
TATCTTTCTGTGATGTGTGAAAGAGACATTTCTGGTCAGAGAAAAATAGA
CCTGACCATGCTCTGACAGGTGTCCCTCCTGACTGCTCTGTAGGATGAAG
ACTTTCCTCTCTCTAAAAAATGTATAGAAAGGATTATGACCAGTCATTGT
CCCTTGTCACAGAAATTCTGTCCTGCTACCTTGTCATTTTGCACACCTTG
ATGGAAGCTTTACAGGGCAATGACTGCGGTGAAGGGATCGCGACACCCTG
AATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_i22.g1 MSMg01no094_i22.g1 CHROMAT_FILE:
MSMg01no094_i22.g1 PHD_FILE: MSMg01no094_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:16 2005
         (518 letters)



>mm_chr10_13865029_13865947
          Length = 919

 Score =  973 bits (503), Expect = 0.0
 Identities = 515/519 (99%), Gaps = 1/519 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaactaattaagaataaaataaaacagaataaaataattcatttattttggacctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaactaattaagaataaaataaaacagaataaaataattcatttattttggacctttg 260

                                                                       
Query: 61  aatccctacaaagttaattaagaaatttagtgccaaacaagaaaataagtttcaccagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatccctacaaagttaattaagaaatttagtgccaaacaagaaaataagtttcaccagtt 320

                                                                       
Query: 121 actgagtttttcctaaatttttgtgtggttttatttcatttcattttgttcctaaaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgagtttttcctaaatttttgtgtggttttatttcatttcattttgttcctaaaatct 380

                                                                       
Query: 181 ctggatgcctcacagagctcatccttcatccccaacaaatcctctggcttgctacccagt 240
           |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 381 ctggatgcctcacagagctcatccttcatccccaccaaatcctttggcttgctacccagt 440

                                                                       
Query: 241 ccagttatctttaaagaaaaaatgcccccttgctgcttgttctcataggaggcagcagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagttatctttaaagaaaaaatgcccccttgctgcttgttctcataggaggcagcagag 500

                                                                       
Query: 301 ctgggattcaagcaggagccctgtcctgagtcctcatgttgtgttgactggtcgcctctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgggattcaagcaggagccctgtcctgagtcctcatgttgtgttgactggtcgcctctg 560

                                                                       
Query: 361 gatggcagtgacaactatatctttctgtgatgtgtgaaagagacatttctggtcagagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatggcagtgacaactatatctttctgtgatgtgtgaaagagacatttctggtcagagaa 620

                                                                       
Query: 421 aaatagacctgaccatgctctgacaggtgtccctcctgactgctctgtaggatgaagact 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 aaatagacctgaccatgctctgacaggtgtcccttctgactgctctgtaggatgaagact 680

                                                  
Query: 481 ttcctctctctaaaaaa-tgtatagaaaggattatgacc 518
           ||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 ttcctctctctaaaaaaatgtatagaaaggattatgacc 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 919
Length adjustment: 10
Effective length of query: 508
Effective length of database: 909
Effective search space:   461772
Effective search space used:   461772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)