Query= MSMg01no094_m09.b1 MSMg01no094_m09.b1 CHROMAT_FILE:
MSMg01no094_m09.b1 PHD_FILE: MSMg01no094_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:34 2005
(314 letters)
>mm_chr12_68246485_68247198
Length = 714
Score = 545 bits (282), Expect = e-159
Identities = 304/314 (96%), Gaps = 6/314 (1%)
Strand = Plus / Plus
Query: 4 ggaattcctggagttcacagcacttacagacacctgaatattcagaattctagtccttcc 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctggagttcaaagcacttacagacacctgaatattcagaattctagtccttcc 263
Query: 64 tagatatcta---tagccccacagacttggagtgaggaggcacaagttgctcatttaagc 120
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagatatctaaagtagc---acagacttggagtgaggaggcacaagttgctcatttaagc 320
Query: 121 acattaacctcctgcccagtgatgggctgtaaaaagttactgattttgtttgccttcaga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcattaacctcctgcccagtgatgggctgtaaaaagttactgattttgtttgccttcaga 380
Query: 181 attttccctatgtgagaaatcaaatatcctgtctacattctttgcaaatttgtgctatac 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 attttccctatgtgagaaatcaaatatcctctctacattctttgcaaatttgtgctatac 440
Query: 241 aaatatattaatttataactggaatggattttataaataagtttgtcctcagctcttcct 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 aaatatattaatttataactggaatggattttgtaaataagtttgtcctcagctcttcct 500
Query: 301 ctgctaaatagctc 314
||||||||||||||
Sbjct: 501 ctgctaaatagctc 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no094_m09.g1 MSMg01no094_m09.g1 CHROMAT_FILE:
MSMg01no094_m09.g1 PHD_FILE: MSMg01no094_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:34 2005
(468 letters)
>mm_chr10_126291755_126292621
Length = 867
Score = 648 bits (335), Expect = 0.0
Identities = 344/347 (99%), Gaps = 1/347 (0%)
Strand = Plus / Minus
Query: 43 aattttttttgttttgtttaaatgggtctaggtagaatataacccaaataatgttccttg 102
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aatttttttt-ttttgtttaaatgggtctaggtagaatataacccaaataatgttccttg 524
Query: 103 aagcagtgtcagtaagggtctgatccactgcagatattagttttagccttttatgttttt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aagcagtgtcagtaagggtctgatccactgcagatattagttttagccttttatgttttt 464
Query: 163 ctatgtttaaaaatatgaaacttatttaaataatgggcaattaaaacatttcagaacaaa 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 463 ctatgtttaaaaatatgaaacttatttaaataatgggcaattaaaacatttcagaatgaa 404
Query: 223 tcaatttgcatatgaccaaggctttaatacccaaagggctatataaaaggacgcagacat 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tcaatttgcatatgaccaaggctttaatacccaaagggctatataaaaggacgcagacat 344
Query: 283 tcatgaatgacaaacagatgcacattcatatgtttacaaaaccttaaattaccagcgtgg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tcatgaatgacaaacagatgcacattcatatgtttacaaaaccttaaattaccagcgtgg 284
Query: 343 ccatgtttaacttcaagtcacaataacaacaaagaattaggttttct 389
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ccatgtttaacttcaagtcacaataacaacaaagaattaggttttct 237
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 867
Length adjustment: 10
Effective length of query: 458
Effective length of database: 857
Effective search space: 392506
Effective search space used: 392506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
