BAC Information

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BAC

Clone NameMSMg01-094P17
Chromosome10 (Build37)
Map Location 53,346,026 - 53,346,300
singlet/doubletsinglet
Overlap geneMcm9
Upstream geneSlc35f1, Pln, EG432460, Asf1a, LOC100042554
Downstream gene4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094P17.T7 (MSMg01no094_p17.b1)MSMg01-094P17.TJ (MSMg01no094_p17.g1)
ACCAG312007AG312008
length681693
length of high quality
(start - end)
316 (36 - 351)295 (112 - 406)
definitionCHROMAT_FILE: MSMg01no094_p17.b1 PHD_FILE: MSMg01no094_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:51 2005CHROMAT_FILE: MSMg01no094_p17.g1 PHD_FILE: MSMg01no094_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTACCTCTATACCCAATTTTTAACACGGTTATTTGATTTTCTAGAGTCTA
ACTCCTTGAGCCCTTTGTATATATTGGATATTATCCCCTTATCAGATTTA
GGATTGGTAAAAATGTTTTCCCAATCTGTTGGATGCCTTTTTGTCTTATT
GACAGTTTTCTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTACCATT
TGTTGATTCTTGATCTTACAGCACAAACCATTGCTGTTCTATTCAGGAAT
TTTCCTCCTGTGCCCATATCTTCGAGGCTCTTCCCCACTTTCTCCTCTAT
AATTTTCACTGCCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGACT
TGAGCTTTGTACAGGAAATAAGAATGGATCAATTCGCATTCTTCTACGTG
ATAACTGCCAGTTGAACCAGCACTATTTGTTGAAAATGCTGTCTTTTTCC
ATGGTTTTAGCTCCTTTGTCAAAGATCAAGTGACCATAGGTATGTGGATT
CATTTCTGAGTCTTCGATTCTGTTCCATTGATCTACCTGTCTGTTACTGT
ACCATTACCATGCAGTTTTTATCACAATTGCTCTGTACTACTGCTTGATG
TCAGGGATAGTGATTCCCCCAGAGGCTCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAATCTTACCTATAGATGAATTATCTATTGTAGTTATGTAAAATGT
GCTTTCCAATTCAGTGAAGTTGCTAGGCCAAGGTGATGCACGCCTGCCAA
TTCCAGCACTCAGGAGGCAGAGGCAGGTGGAGCTCGGTGAGTCCTAGGCT
ACCCTGTTTCTACAAAGACAGTTCTAGGACAGCCAGGGCTATGCAGAGAA
ACCCTGTCTTGAAAAATCAAAATCAGTGAAGTTGAGGCCACGGGGGAGGC
TCAGTGTTGGCAGCACAAGCCTGACGACCCAAGTCTGGATGCCTGGGACC
AGCTGGACAGTAGCACATAGCACATATGCAATTCCAGTGTGCTACTACTG
AGAGATGGTTGGTAGAGATGGGAATCTGACCCAGTAGCTCAAGCTGCCAA
CTATTCTAGACTATACAGTGCAGCTACAGAAACAAGAGAGCCCATGTCTC
AAAGTGGCAGGTAAAAATCAATGCCCTAAAGTTTCTTCTGACATCCACAC
AGATGTTATAGTATACATGCATCCATATTCTTATTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCAACCCACACACTTCCTCCCCTTTATTTGTGTGAGTC
TCCATCCATTTTTTAGATATAAATCCCGAGGCTCTTCCTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_p17.g1 MSMg01no094_p17.g1 CHROMAT_FILE:
MSMg01no094_p17.g1 PHD_FILE: MSMg01no094_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:51 2005
         (295 letters)



>mm_chr10_53345826_53346520
          Length = 695

 Score =  485 bits (251), Expect = e-141
 Identities = 269/275 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgaagttgctaggccaaggtgatgcacgcctgccaattccagcactcaggaggcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgaagttgctaggccaaggtgatgcacgcctgccaattccagcactcaggaggcaga 260

                                                                       
Query: 61  ggcaggtggagctcggtgagtcctaggctaccctgtttctacaaagacagttctaggaca 120
           ||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaggtggagcttgctgagttctaggctaccctgtttctacaaagacagttctaggaca 320

                                                                       
Query: 121 gccagggctatgcagagaaaccctgtcttgaaaaatcaaaatcagtgaagttgaggccac 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 gccagggctatgcagagaaaccctgtcttgaaaagtcaaaatcagtgaagttgaggccac 380

                                                                       
Query: 181 gggggaggctcagtgttggcagcacaagcctgacgacccaagtctggatgcctgggacca 240
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 381 gggggaggctcagtgttggcagcacaagcctgacgacccaagtccgggtgcctgggacca 440

                                              
Query: 241 gctggacagtagcacatagcacatatgcaattcca 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 441 gctggacagtagcacatagcacatatgcaattcca 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)