BAC Information

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BAC

Clone NameMSMg01-095H07
Chromosome10 (Build37)
Map Location 59,581,467 - 59,581,930
singlet/doubletsinglet
Overlap geneSpock2
Upstream geneSh3md4, Sept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907, LOC664936, Dnajb12, Ddit4, D10Ertd641e, Ascc1
Downstream geneChst3, LOC100039080, Psap, Cdh23, 4632428N05Rik, Slc29a3, Unc5b, Pcbd1, Sgpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095H07.T7 (MSMg01no095_h07.b1)MSMg01-095H07.TJ (MSMg01no095_h07.g1)
ACCAG312364AG312365
length668713
length of high quality
(start - end)
464 (37 - 500)291 (55 - 345)
definitionCHROMAT_FILE: MSMg01no095_h07.b1 PHD_FILE: MSMg01no095_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:29 2005CHROMAT_FILE: MSMg01no095_h07.g1 PHD_FILE: MSMg01no095_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGATCCGCGGAATTCCAAGGACTCTACNGTGGGTTGTGACTGAAGTCTG
TGAGTGGACTCCAAAGCCCTCAGCAGGTGCTTCCCAGTGGCAGGATCATA
GAGGATTCTAGATCACCTCGGGTCCGGCCCACTCCACTGTTTTAGTAGGT
GGCTGTTGAGGGCACAGATCTTGATGGTCAAAGACGGCTGCTCCCCAAAC
ACCAGACAATTACAAGATCCTCTGTCCTTGAAATGGGGTCAATATGGAGC
CTGGAATTGGATAGCCTCCTGCCTCAGTTCCTTACTGCTGGAATTGTAGG
CGTGCAACCTCATGCTTTTTCTCTTCCACTTTACAACCATACCACCCCCT
CTTCCCAAGGGGAAAAAAATAGGAGCAGCAGGAGACAGTCCCTGAAAAAG
GCTGGTACCTACTTCCACACCAGTCTGGTCATCTTGGCTGGCCTCAGCTA
TTTGGCCATTCTCAGCCTATTTCCCATCTTCGGGAAAGGAGGCTCTGGGC
GGAAGAGCCCTGCACCGAGATGCTGTTGAAGAAGGCGCTAGGACTGAGCT
GTCATCCTTTGCCTGCTCCCACAAAAGGCCAAGTTGTTCTTGTCCCTGGT
TATTTTCTCACTAACATAATACTTCTCCTCCTTTATCCCATTATACAATC
TATTTTCTTCTTATTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTA
TACAGAGAAACCCTGTCTCGAAAAAACAAAAACAAAAACAAAAACAAAAA
CAAAAAAAGACAAAAAAAAAAAAAGAGTATGGGGCACGGGCTGGGCAAGT
ACCTCACTGCTAAGTACGTGGTCCCAGCCCTCAGGAGGCAGAGGCAGGCA
GGCATTCCTCTGTGAGTTCAAAGCCAGCCTGGCCTACAAATCAAGTTCCA
GGCCAGCCAGGGCTACACAGAGAACCCCTGTTTCAAGAAAACAAAACTAA
GCAAGACCCAGAGATAAACAGATGTGTCTGGGCCCTTGCTCTGCTTTAAC
CTATATTTGAATGAGTTTGCATGTATATGTGTTTGTATGAATATGTGTAT
CCCACATAACATCTTCGGCGCTGGCCGTATTTAATTTCTTTCTCTCGCAA
CATCAATCGCCCTTTGTTCCTACGTCTATATATTTTATAGATCTATTTAC
TGTTTTTTCTTCACTCTTATACTTCTTTTTTTCTTATTTTGCTCGGGATA
TGAGTTTTATTTAAGTATATATTTAATTATAATTTAATTATAATAATAAT
TTCGACTAATTATATAATAAGCCGACTAAAAGATATATATATATTTAATC
TCATGAATATGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_h07.b1 MSMg01no095_h07.b1 CHROMAT_FILE:
MSMg01no095_h07.b1 PHD_FILE: MSMg01no095_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:29 2005
         (464 letters)



>mm_chr10_59581267_59582130
          Length = 864

 Score =  851 bits (440), Expect = 0.0
 Identities = 458/464 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgactgaagtctgtgagtggactccaaagccctcagcaggtgcttcccagtggcaggat 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 gtgactgaagtctgtgagtggactccaaagccctcagcaggtgcttccgagtggcaggat 260

                                                                       
Query: 61  catagaggattctagatcacctcgggtccggcccactccactgttttagtaggtggctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 catagaggattctagatcacctcgggtccggcccactccactgttttagcaggtggctgt 320

                                                                       
Query: 121 tgagggcacagatcttgatggtcaaagacggctgctccccaaacaccagacaattacaag 180
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tgaggacacagatcttgatggtcaaagacggctgctccccaaacaccagacaatcacaag 380

                                                                       
Query: 181 atcctctgtccttgaaatggggtcaatatggagcctggaattggatagcctcctgcctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcctctgtccttgaaatggggtcaatatggagcctggaattggatagcctcctgcctca 440

                                                                       
Query: 241 gttccttactgctggaattgtaggcgtgcaacctcatgctttttctcttccactttacaa 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 gttccttactgctggaattgtaggcgtgcaaccccatgctttttctcttccactttacaa 500

                                                                       
Query: 301 ccataccaccccctcttcccaaggggaaaaaaataggagcagcaggagacagtccctgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccataccaccccctcttcccaaggggaaaaaaataggagcagcaggagacagtccctgaa 560

                                                                       
Query: 361 aaaggctggtacctacttccacaccagtctggtcatcttggctggcctcagctatttggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaggctggtacctacttccacaccagtctggtcatcttggctggcctcagctatttggc 620

                                                       
Query: 421 cattctcagcctatttcccatcttcgggaaaggaggctctgggc 464
           |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 cattctcagcttatttcccatcttcgggaaaggaggctctgggc 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)